Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq292 132 7e-26 >seq292 Length=28646 Score = 132 bits (146), Expect = 7e-26 Identities = 328/489 (67%), Gaps = 14/489 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| |||||||| || || || || | ||| |||| |||| || ||||||||||| Sbjct 11324 CAGGGTGGCAATAAGCGTCCCGGTGCCTTTGCCATCTATCTGGAGCCATGGCACGCGGAT 11265 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || | | | || | || ||| || ||||||| || ||| | ||| Sbjct 11264 GTCTTCGATTGGCTGAACCTGAGAAAGAACCACGGAAAGGAAGAGGTTCGCGCCCGTGAC 11205 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||||||||||||| ||| || ||| | ||||||| || ||| || || | Sbjct 11204 TTGTTTTATGCACTTTGGACTCCGGATCTATTCATGAGACGTGTCGAGAAGAACCAAG-- 11147 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || | || || | | |||| || || | ||| || ||||| || Sbjct 11146 -ACTGGACTCTGTTCTGTCCTCATGAGGCACCGGGCCTTGCTGATGTCTATGGCGAGGAA 11088 Query 97113 TTTGAGGCCAAGTAC--ACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGAT 97169 || || ||| || || | || ||| ||||||| ||| ||| ||||| ||| | Sbjct 11087 TTCGATGCCCTCTATGAACAG--TATGAGAAAGAGGGACGAGGTCGTCAGACG-GTCAAG 11031 Query 97170 GCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACAT 97228 || | |||| | |||| | || ||| | || ||| |||||||| ||||| || || Sbjct 11030 GCCC-AGAAGTTGTGGTATGCGATCCTAGAAGCACAGACCGAGACTGGGACTCCTTATAT 10972 Query 97229 TCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 || ||||||||| || || || |||||||| || |||| || ||| | | Sbjct 10971 GCTTTACAAGGATGCCTGCAACAAGAAGAGCAACCAGAAGAACCTGGGGACAATCCGGAG 10912 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGT 97348 |||||||||||||||||||||||| |||||| | || || |||| || || ||| Sbjct 10911 CTCCAATCTGTGCACGGAAATTGTCGAGTACAGTGCCCCAGATGAGATCGCTGTCTGCAA 10852 Query 97349 TCTGGCATC 97357 ||| || || Sbjct 10851 TCTCGCCTC 10843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050927926680