Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq292 206 3e-48 >seq292 Length=28646 Score = 206 bits (228), Expect = 3e-48 Identities = 681/1046 (65%), Gaps = 12/1046 (1%) Strand=Plus/Plus Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 || || ||||| ||||| || |||||||| ||||| || | ||||| ||||| || || Sbjct 10936 TGGTTGCTCTTCTTGTTGCAGGCATCCTTGTAAAGCATATAAGGAGTCCCAGTCTCGGTC 10995 Query 62906 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT 62964 || | ||||| ||||| | ||| | | || | ||||| | | | | ||| | Sbjct 10996 TGTGCTTCTAGGATCGCATACCACAACTTCTGG-GCCTTGACCGTC--TGACGACCTCGT 11052 Query 62965 TTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 ||||||| ||| ||| ||| | ||||| || || || | |||| | || Sbjct 11053 CCCTCTTTCTCATACTGTTCATAGAGGGCATCGAATTCCTCGCCATAGACATCAGCAAGG 11112 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || || |||| ||||| | || | ||| ||| || | || || ||| |||| Sbjct 11113 CCCGGTGCCTCATGAGGACAGAACAGAGTCCAGTCTTGGTTCTTCTCGACACGTCTCATG 11172 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || ||||| ||| ||||||| || ||| | || | || | | || || ||||| Sbjct 11173 AATAGATCCGGAGTCCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCG 11232 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 |||||| | || | || | | | | ||| | ||||| || |||| || ||| Sbjct 11233 TGGTTCTTTCTCAGGTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATG 11292 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | || || || || || || ||||| || | || | || ||||| || | Sbjct 11293 GCAAAGGCACCGGGACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAG 11352 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 || | | ||| ||||| | ||||||||| || || |||||||| | |||||| ||| Sbjct 11353 ACACGAAGCATGGGAATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCA 11412 Query 63323 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | |||||||| | | | | | || || || || || || | || ||||| | || Sbjct 11413 GTAGCACGAATGCAA-TGAGCGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCATAGC 11471 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 || || | || || || || ||||| || || || || |||||| | | || Sbjct 11472 ACAAGTCTTGAGAGTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAA 11531 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 || |||| ||| | | ||| || ||||| || | || ||||| ||||| || Sbjct 11532 GCATGAGGACAATTGAGGTTGCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGT 11591 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 || || || | || | || ||||| ||||| || || || || || | ||| Sbjct 11592 GAAGCACTTCTGGGACATGAGGTTGTAGGTCTCTATCGCCTTCTCGATGTCATCTCCATG 11651 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT-GTTTA 63620 || || ||||| |||||||| | |||||| || ||||| || | | |||||| | | Sbjct 11652 GATGCCAACTGCCACACGCATGAGCATGTGTTGCGGTCTCTCGGCCA-CTTGTTTGCCAA 11710 Query 63621 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 | || | || || ||| |||||||||| || || || || || | ||| ||||||| Sbjct 11711 TCTTGAGCAGATATGATCTTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTC 11770 Query 63681 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 63740 | ||||||| || ||||||| || | ||| || | | |||| |||| ||| Sbjct 11771 GGTCGTAAACGATGGCCGAGTTCAGCTCATCAGCATGTCTCATAAC-ACATTCATACGTC 11829 Query 63741 TACTTGAA-ATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 63799 | || | | || |||||| | || ||| || || || |||| ||||| | | | |||| Sbjct 11830 TCCTGGGAGATCATAGGAGAGTGCTTCTTGTTCTTGGGGTTGATATAGTAGTAGAGATCC 11889 Query 63800 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859 || ||| | ||| |||| || || | ||||| ||||| || ||||| || | Sbjct 11890 GACACCACCGAAGAGAATTGTTTCTTAGTCTGCTTGTGGAGATTGGACACGGCGATACGC 11949 Query 63860 GCGGCTAGAATGGCATAATCCGGATG 63885 || || || ||||||||||| ||||| Sbjct 11950 GCTGCGAGGATGGCATAATCGGGATG 11975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624927082800