Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq56 113 1e-19 seq5 107 4e-18 seq201 102 2e-16 >seq56 Length=70628 Score = 113 bits (124), Expect = 1e-19 Identities = 365/558 (65%), Gaps = 18/558 (3%) Strand=Plus/Minus Query 297169 ACCTTTGAATCCTCGATACCACGGTTTCAT----TTCGACGAGATCTTCTCCAGCAATCA 297224 ||| |||||||| ||| |||| |||| ||| ||| || ||||| || || || Sbjct 38429 ACCCTTGAATCCACGAAACCATGGTTGCATGGGCTTCCAC----TCTTCACCCGCCATTT 38374 Query 297225 ATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAAC 297284 ||||| | || || ||||| || | ||||||||| | |||||| || ||| | Sbjct 38373 TGCGCTTGAGATTCTCCACGATATCCTCGGGATTGTAATTGGGGATAGAAGAACTCCAGC 38314 Query 297285 CGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACT 297344 | || ||||| || | |||||| |||||||| | |||| || |||||||| ||| Sbjct 38313 CTGTTCCGATACCGTCGGCACCATTGACCAGAATCATGGGAACGACTGGCACATATAACT 38254 Query 297345 CTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGA 297404 | ||||||||||| | |||||||| || ||| ||| || || | | | Sbjct 38253 CCGGTTCGATCTTCTTGTCGTCATCAGTGTTGTAAGTCAAGAGAGGTTCATCAGCCTGGT 38194 Query 297405 CGAAAACCTGTCGAGTCTGAGGG-TTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGA 297463 ||| | || || | | |||| ||| |||||||||||||| || || || Sbjct 38193 GGAAGAGCT-TCCGGGCGAAGGGAGACAGACGGGTGAAAATATATCGAGCGCTAGCAGAG 38135 Query 297464 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTA 297523 || |||| || || || || ||||||||||| ||| | | |||||| || Sbjct 38134 TCGCTACCTCCTTGATTTCGCGTGCCGAACTGGCCGGATGGCTCGAGCAAGTTGACATTG 38075 Query 297524 TTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCA 297583 ||| ||||||| ||| || || || ||||||||| || || || || ||||| Sbjct 38074 TTGGATCCGACAAAATTTTGAGCCAGACCAACGATGGTCTGCTGGAGCGACGCCTCGCCG 38015 Query 297584 TGGTGAT-AGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 297642 || |||| || || || | | | || |||| || | || || |||| || | Sbjct 38014 TGATGATAAGCCGTCATTC-CACCGACAAGACCGGCGAGTTCGGCGACTTTCATATCTTT 37956 Query 297643 CGTCAAATTGCGCTTGA---AAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 297699 | |||| || || |||| |||| ||| ||| || || || ||| ||| || || || Sbjct 37955 CTTCAAGTTTCGTTTGAAGCAAGC-GAACATA--ACCTTTCGCTGACCAGGCTTCAACCC 37899 Query 297700 ATCAACGACCGACGGAAT 297717 ||| || || || || || Sbjct 37898 ATCGACAACAGAGGGGAT 37881 Score = 104 bits (114), Expect = 5e-17 Identities = 250/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 ||||| || ||||| || | | ||||||| |||||||| || ||| | |||||| | Sbjct 37492 ACGATCGGGGTGATAAATTCCACCAAGAACTTTGGAATTTGGAGCAGACT-GGGAAATTG 37434 Query 298145 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 || || || || || || | | || ||||||| |||| ||| |||| || | Sbjct 37433 AACT-TGCAAGAAATTAATCAACAAGCCTTTAATGTGACTTCCATCATGATCCTGATCTG 37375 Query 298203 TCATGATCATCACATGACCGTAACGAAG--CGAGGACGTGTCTTTGTACACTTTACCGGT 298260 |||||||||||| || || || ||||| || || || || |||| ||||| | Sbjct 37374 TCATGATCATCAAGTGTCCATAGCGAAGGCCGTGG--GTATCGGTGTAGACTTTCTTGTG 37317 Query 298261 TTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTGCCA 298319 || || ||||| | | ||||| | | ||| | || ||||||| | ||| | | Sbjct 37316 CTGGAGACCGAGGAAGTTTTTGAT-GTTCTGAATCTCGGCGTTCTTTGAGATCTGATCAA 37258 Query 298320 CGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 298379 | ||||| || ||||||||||| ||||| || || || || || || ||| | ||| Sbjct 37257 CTGATGCGTCTCGGACATTCAAAAGTTTACCGCGCAGGGGAAAGACGCCAAACAAATCGG 37198 Query 298380 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 298439 |||| || || || | || || |||||||| || ||||| ||||| ||||| | Sbjct 37197 GACCAACGACCGATCGTCCGGCCATTGCAAGACCTTTGGCAGAATCTCCCTCAGTCAGTA 37138 Query 298440 TGAGAGTGCA 298449 | | ||||| Sbjct 37137 TCAAGGTGCA 37128 >seq5 Length=88410 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTC 332869 |||||| || ||||| || |||| | ||| || || | || || || || || || Sbjct 50364 AATGATGACTACACCACCCTCAAACTCCTTGAGAGCCTTGGACAGAGCGCCCAGCGAGTC 50423 Query 332870 ACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAGC 332929 ||||||| | ||||||||||||| || | |||||||| ||| || |||||||| | || Sbjct 50424 CCGGTCAAGGTAGTTGGTCGGTTCATCGAGAACGATCAAGTGAGGACGTTGCCAT-GTGC 50482 Query 332930 -AGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 ||| ||| ||| | || | ||||| ||||| |||||||| |||||||| |||| Sbjct 50483 AAGCAGCGAGAACGACCTTGACACGCTGCCCACCAGACAGACCACGCATGCGAGAGTGAG 50542 Query 332989 TTGTAAATTCAGGGTCGAGACCAACATTTGC 333019 | | ||| | ||||||||| | ||| || Sbjct 50543 AGATGAGTTCCGCGTCGAGACCGAAATTGGC 50573 >seq201 Length=168916 Score = 102 bits (112), Expect = 2e-16 Identities = 171/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGC--GACGCTATTCCATGCC 243559 |||||||| || || |||| | ||| |||||||| |||| || ||| | || || | Sbjct 77887 ATCATCACCGAGGCTGTTGTCATCGAGAAGGAATT--TTTGACAGATGCTTTGCC-TGTC 77831 Query 243560 GG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGC 243618 | || ||||||||||| | |||| ||| ||| || || || ||||| |||||||| Sbjct 77830 GCTCTGCTTGGCATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTTGCCGACCGT 77771 Query 243619 ATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATG 243678 || || | || || || | |||| ||||| || |||| || || ||||||| Sbjct 77770 CTTCTCCTTGCCCTCGGAAACAAGAAGTACTACAATGCCCAGAATCCTTTCAGCTTTATG 77711 Query 243679 GAGCTCATTTCGCTTCAAGGGAAA-ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||| || || |||||| || ||||||||||| ||||||||| ||||||| || Sbjct 77710 GACAACATCTCA-TTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTCGGTGATTACCA 77652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867381329550