Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq292 219 4e-52 >seq292 Length=28646 Score = 219 bits (242), Expect = 4e-52 Identities = 609/927 (66%), Gaps = 14/927 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| ||| |||| | || || || |||||||| |||| Sbjct 11762 AACTACCAATACTTCGGCTTCAAGACTTTGGAAAGATCATATCTGCTCAAGAT---TGGC 11706 Query 93775 AGG---GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGC 93831 | || ||||| ||||||| || |||| ||||| || || | || || || || Sbjct 11705 AAACAAGTGGCCGAGAGACCGCAACACATGCTCATGCGTGTGGCAGTTGGCATCCATGGA 11646 Query 93832 CACGACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG 93891 | ||||| ||| | | | | | || |||| | ||| | | ||| Sbjct 11645 GATGACATCGAGAAGGCGATAGAGACCTACAACCTCATGTCCCAGAAGTGCTTCACCCAC 11586 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || |||||||| || || || ||| || || |||| || || ||| || Sbjct 11585 GCCTCTCCAACTCTGTTCAATGCCGGCACTCCGCAACCTCAATTGTCCTCATGCTTCTTG 11526 Query 93952 AT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | ||| | || | ||| ||| ||||||| ||||| |||||| ||||| | Sbjct 11525 GTCGAC-ATGAAAGAGGACAGCATTGAGGGAATTTACGACACTCTCAAGACTTGTGCTAT 11467 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||||| || || || || || || ||| | || | | ||||| | ||||| Sbjct 11466 GATCTCCAAGACTGCTGGCGGTATTGGCCTCAACGCTCATTGCATTCGTGCTACTGGTTC 11407 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||| || ||| ||||| ||||| ||||| || ||| | || ||||| || |||||||| Sbjct 11406 CTATATTGCCGGGACCAACGGCACTTCCAATGGTCTCATTCCCATGCTTCGTGTCTTCAA 11347 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || || || |||||||||||||| | | | ||| | || || |||| Sbjct 11346 CAACACTGCCCGTTATGTGGACCAGGGTGGCAATAAGCGTCCCGGTGCCTTTGCCATCTA 11287 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 ||| ||||| ||||||||||| || | || | ||||| ||||||||||||| || Sbjct 11286 TCTGGAGCCATGGCACGCGGATGTCTTCGATTGGCTGAACCTGAGAAAGAACCACGGAAA 11227 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || || | ||| | ||| | || || || || ||| || || || || |||| Sbjct 11226 GGAAGAGGTTCGCGCCCGTGACTTGTTTTATGCACTTTGGACTCCGGATCTATTCATGAG 11167 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 ||| |||||||| ||| | ||||| ||| || ||||| |||| || || || | Sbjct 11166 ACGTGTCGAGAAGAACCAAGACTGGACTCTGTTCTGTCCTCATGAGGCACCGGGCCTTGC 11107 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGG 94429 || || | ||| | || || | | | |||| | || || | | || | ||| Sbjct 11106 TGATGTCTATGGCGAGGAATTCGATGCCCTCTATGAACAGTATGAGAAAGAGGGACGAGG 11047 Query 94430 CC--AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 | || ||| | | || |||| ||||| || |||| | || | |||| || Sbjct 11046 TCGTCAGACGGTCA---AGGCCCAGAAGTTGTGGTATGCGATCCTAGAAGCACAGACCGA 10990 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 ||| || || || || || | | |||||| | |||| ||| ||||||| || | Sbjct 10989 GACTGGGACTCCTTATATGCTTTACAAGGATGCCTGCAACAAGAAGAGCAACCAGAAGAA 10930 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| ||| ||| |||||| ||||||||||| || ||||||||||| | | | || || Sbjct 10929 CCTGGGGACAATCCGGAGCTCCAATCTGTGCACGGAAATTGTCGAGTACAGTGCCCCAGA 10870 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTC 94634 ||||| ||||| || || || | ||| Sbjct 10869 TGAGATCGCTGTCTGCAATCTCGCCTC 10843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 198/292 (68%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 95074 AAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAG 95133 ||||| ||||| ||| | || ||||| ||||| ||||| || || ||||| | || Sbjct 10415 AAACATGGTGTTCGCAACTCTCTCCTTGTTGCCCCTATGCCTACTGCATCCACCTCTCAA 10356 Query 95134 ATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTG 95193 ||| | ||||||||||| | ||||| || | ||| |||||| | ||| | | || ||| Sbjct 10355 ATCTTGGGCAACAACGAATGCTTCGAGCCATACACGTCCAACATCTACTCCCGTCGTGTG 10296 Query 95194 CTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGT 95253 | || || ||||||| ||| |||| ||| | ||| || || ||| Sbjct 10295 TTGGCTGGTGAATTCCAAGTCGTCAATCCCTGGCTCTTGAAGGATTTGGTTGACCTTGGT 10236 Query 95254 GTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCA-ACGGCTCCGTCCAGAACAT 95312 | ||| ||||| | |||||| | | | ||| | ||||||| | |||||||| Sbjct 10235 CTCTGGTCCGACAACATGAAGAACAGAAT-CATTGCGGAAGGCGGCTCCATTCAGAACAT 10177 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATC 95364 ||| | || || | |||||||| || || |||||||| || ||||| ||| Sbjct 10176 CCCCAACATCCCTGCTGACATCAAAGCTCTATACAAGACGGTCTGGGAAATC 10125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717677652280