Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq201 114 1e-20 seq151 107 2e-18 >seq201 Length=168916 Score = 114 bits (126), Expect = 1e-20 Identities = 252/368 (68%), Gaps = 11/368 (3%) Strand=Plus/Minus Query 50363 AGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCA 50422 |||| | ||||| ||| | ||||| || ||| | || ||||| || || || ||||| Sbjct 78014 AGGCCTTATGCCAGGCTTGACGTTCTCGAATGAGCTCATCTCGCGTGATGAGGGTATGCA 77955 Query 50423 CACAGACTTTGCGTGT-TTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAA 50481 || |||||||| ||| || | | ||| || | || | | || || | ||| Sbjct 77954 TACCGACTTTGCTTGTCTTCTGATGCAACACC----TCAA-GTATAAGCCCGATCCCAAA 77900 Query 50482 CA-ATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCT 50540 | || |||||| ||| || || || | |||||| || || ||||| || || ||| Sbjct 77899 CTCATCGAGGACATCATCACCGAGGCTGTTGTCATCGAGAAGGAATTTTTGACAGATGCT 77840 Query 50541 TTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTT 50600 || || || || || | ||||||||||| | ||||| | || |||||||| ||| Sbjct 77839 TTGCCTGTCGCTCTGCTTGGCATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTT 77780 Query 50601 GCAGACAG-ATTGTTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTT 50659 || ||| | || | |||| || ||| | ||| ||||| ||||| | || |||| Sbjct 77779 GCCGACCGTCTTCTCCTTGC-CCTCGGAAACAAGAAGTACTACAATGCCCAGAA-TCCTT 77722 Query 50660 TCCG-TTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAG 50718 || | |||||| | ||||| || |||| ||| || |||||||| ||||| | ||||| | Sbjct 77721 TCAGCTTTATGGACAACATCTCATTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTCG 77662 Query 50719 GCGAATAC 50726 | || ||| Sbjct 77661 GTGATTAC 77654 >seq151 Length=50061 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || ||||||||||| |||||||| || || | |||| |||||||||||| Sbjct 37235 TGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTGAGAGTGCGGCCGTCTTCGAGTTGC 37176 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || || ||| | || |||||||| || |||||||| || ||||| ||||| || || Sbjct 37175 TTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTG 37116 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 || | | || | || || ||| || || |||| ||| | ||||||||||| Sbjct 37115 GACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTA 37056 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | || || ||||| ||||||||| Sbjct 37055 AGAGTCTTGACGAAGATTTGCATA 37032 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | ||||||||||| || ||||||||||| |||| |||| || ||| Sbjct 37013 ACCAAATGCAAGGTAGATTCTTTCTGAATGTTGTAATCACTCAAGGTGCGGCCATCCTCG 36954 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || ||||| || || | || |||||||| ||||| ||||| |||||||| ||||| | Sbjct 36953 AGCTGTTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGA 36894 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || |||| | || | || || ||| || || || | || | |||||| Sbjct 36893 ATCTTGGACTTTACATTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 36834 Query 137383 CCGGTCAATG 137392 ||||||| || Sbjct 36833 CCGGTCACTG 36824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488538546627600