Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq292 109 8e-18 seq201 100 4e-15 >seq292 Length=28646 Score = 109 bits (120), Expect = 8e-18 Identities = 256/388 (66%), Gaps = 15/388 (4%) Strand=Plus/Minus Query 259795 CGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGT 259854 |||| | || || | |||||||||||||| || ||||| |||| || || | Sbjct 11694 CGAGAGACCGCAACACATGCTCATGCGTGTGGCAGTTGGCATCCATGGAGATG---ACAT 11638 Query 259855 CGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCAC 259914 ||| || ||| | ||| |||||| | |||||| ||| ||| ||||| Sbjct 11637 CGAGAAGGCGATAGAG------------ACCTACAACCTCATGTCCCAGAAGTGCTTCAC 11590 Query 259915 CTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 | || | || || || || ||||||||||| |||| || || || || ||||| Sbjct 11589 CCACGCCTCTCCAACTCTGTTCAATGCCGGCACTCCGCAACCTCAATTGTCCTCATGCTT 11530 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | |||||||| | || || ||||| || || ||||| |||||| || || Sbjct 11529 CTTGGTCGACATGAAAGAGGACAGCATTGAGGGAATTTACGACACTCTCAAGACTTGTGC 11470 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||||||| | || ||||| || || | ||| || | || || | || Sbjct 11469 TATGATCTCCAAGACTGCTGGCGGTATTGGCCTCAACGCTCATTGCATTCGTGCTACTGG 11410 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 |||| | || || ||||||||| ||||| || || | ||||||||||| || || Sbjct 11409 TTCCTATATTGCCGGGACCAACGGCACTTCCAATGGTCTCATTCCCATGCTTCGTGTCTT 11350 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || || || || |||||| Sbjct 11349 CAACAACACTGCCCGTTATGTGGACCAG 11322 >seq201 Length=168916 Score = 100 bits (110), Expect = 4e-15 Identities = 179/258 (69%), Gaps = 9/258 (3%) Strand=Plus/Minus Query 1456000 TTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 |||||| || ||||||||||| ||||| || | ||| | || |||||||||||| Sbjct 78320 TTCCAGGTCATGATCGAAAACATTCACTCAGAGATGTACAGCTTGCTCATCGACACCTAC 78261 Query 1456060 GTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTG 1456119 |||| || || | ||| | | |||||| |||||| || || | || | | Sbjct 78260 ATCAAAGATCCCAAACAAAAGTCCTATCTCTTTGACGCCATTGATACTATCCCCTGCATC 78201 Query 1456120 AGGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTG 1456176 | || ||||| |||||||| ||||||||||| |||||||| || | ||| | Sbjct 78200 CGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCTCAGACAAGGAG----TCTA-GCTTCG 78146 Query 1456177 CCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG 1456235 || | || ||||||| || | | |||||| ||||| || ||||| ||| ||| | Sbjct 78145 CCCAACGCCTCGTCGCATTCTCTGCCGTCGAAGGCATTTTCTTCTCCGGCTCATTCGCCT 78086 Query 1456236 CCATCTTTTGGCTCAAGA 1456253 ||||||| ||||| |||| Sbjct 78085 CCATCTTCTGGCTGAAGA 78068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177725068508666