Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq292 194 2e-44 seq56 109 6e-19 >seq292 Length=28646 Score = 194 bits (214), Expect = 2e-44 Identities = 467/699 (67%), Gaps = 6/699 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| ||| |||| ||| || |||||| | ||||| |||||||| Sbjct 11624 GAGACCTACAACCTCATGTCCCAGAAGTGCTTCACCCACGCCTCTCCAACTCTGTTCAAT 11565 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || || ||||| |||| |||||| |||| | ||||| || ||| Sbjct 11564 GCCGGCACTCCGCAACCTCAATTGTCCTCATGCTTCTTGGTCGACATGAAAGAGGACAGC 11505 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || || ||||| || |||||| ||||| ||||||||| | || ||| Sbjct 11504 ATTGAGGGAATTTACGACACTCTCAAGACTTGTGCTATGATCTCCAAGACTGCTGGCGGT 11445 Query 53423 ATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || || || || |||| | | ||||| | || | || ||||| ||||| Sbjct 11444 ATTGGCCTCAAC-GCTCATTGCATTCGTGCTACTGGTTCCTATATTGCCGGGACCAACGG 11386 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | || |||| || | || ||||| || |||||||||||||| ||||| || || | Sbjct 11385 CACTTCCAATGGTCTCATTCCCATGCTTCGTGTCTTCAACAACACTGCCCGTTATGTGGA 11326 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 ||||||||| ||||| || | || |||||||| || ||||| |||||||| || Sbjct 11325 CCAGGGTGGCAATAAGCGTCCCGGTGCCTTTGCCATCTATCTGGAGCCATGGCACGCGGA 11266 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | || | || | ||| | ||| || || | |||||| | ||| |||||| Sbjct 11265 TGTCTTCGATTGGCTGAACCTGAGAAAGAACCACGGAAAGGAAGAGGTTCGCGCCCGTGA 11206 Query 53662 CCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGA 53721 | ||||| || || |||| |||||| || |||||| | || |||||| || | || Sbjct 11205 CTTGTTTTATGCACTTTGGACTCCGGATCTATTCATGAGACGTGTCGAGAAGAACCAAGA 11146 Query 53722 GTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||| ||| | || || | ||| || ||||| | |||||| || ||||| || Sbjct 11145 CTGGACTCTGTTCTGTCCTCATGAGGCACCGGGCCTTGCTGATGTCTATGGCGAGGAATT 11086 Query 53782 TAACGAGATGTATCGGAC-GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | | | ||| | || ||| | |||| || ||| ||||||||| | Sbjct 11085 CGATGCCCTCTAT-GAACAGTATGAGAAAGAGGGACGAGGTCGTCAGACGGTCAAGGCCC 11027 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGC-CAGGTGGAGACGGGAACGCCGTACATGTGC 53899 || | ||| |||| ||||| | ||| ||| ||||| || || || || ||| Sbjct 11026 AGAAGTTGTGGTATGCGATCCT-AGAAGCACAGACCGAGACTGGGACTCCTTATATGCTT 10968 Query 53900 TACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||||||| | |||| |||||||||||||||||||| Sbjct 10967 TACAAGGATGCCTGCAACAAGAAGAGCAACCAGAAGAAC 10929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || || || || || ||||| || || || || |||| ||| |||||||| Sbjct 10403 CGCAACTCTCTCCTTGTTGCCCCTATGCCTACTGCATCCACCTCTCAAATCTTGGGCAAC 10344 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 ||||| |||||||| |||||| ||||||||||| Sbjct 10343 AACGAATGCTTCGAGCCATACACGTCCAACATCTAC 10308 >seq56 Length=70628 Score = 109 bits (120), Expect = 6e-19 Identities = 296/451 (66%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || ||||| |||||||||||||| || || | || | || ||| Sbjct 38314 CCTGTTCCGATACCGTCGGCACCATTGACCAGAATCATGGGAACGACTGGCACATATAAC 38255 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| || | || | ||||||| | ||| |||| | | | |||||| | Sbjct 38254 TCCGGTTCGATCTTCTTGTCGTCATCAGTGTTGTAAGTCAAGAGAGGTTCATCAGCCTGG 38195 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| | | || | | ||| || ||| ||||| || ||||| | ||| || | Sbjct 38194 TGGAAGAGCTTCCGGGCGAAGGGAGACAGACGGGTGAAAATATATCGAGCGCTAGCAGAG 38135 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || | || ||| ||||| || ||||| || || |||||||| | ||||| ||| Sbjct 38134 TCGCTACCTCCTTGATTTCGCGTGCCGAACTGGCCGGATGGCTCGAGCAAGTTGACATTG 38075 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 |||| || || ||||| ||||||| | || || || ||| || ||| || ||| Sbjct 38074 TTGGATCCGACAAAATTTTGAGCCAGACCAACGATGGTCTGCTGGAGCGACGCCTCGCCG 38015 Query 152176 TGGTGATACGCCGTC--TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 || ||||| |||||| | | ||| | | || || | | || || ||||| || Sbjct 38014 TGATGATAAGCCGTCATTCCACCGACAAG--ACCGGCGAGTTCGGCGACTTTCATATCTT 37957 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 || ||| ||| |||| || ||| | || ||||| ||||| || ||||| || | Sbjct 37956 TCTTCAAGTTTCGTTTGAAGCAAGCGAACATAACCTTTCGCTGACCAGGCTTCAACCCAT 37897 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTC 152324 | || || || ||||| || || |||| Sbjct 37896 CGACAACAGAGGGGATCGATCGTATGTTGTC 37866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209891701400