Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq151 158 3e-33 seq341 118 3e-21 seq82 102 2e-16 seq49 95.1 3e-14 >seq151 Length=50061 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| || || || |||| || || ||| | ||||| || ||| Sbjct 37472 AGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTATAGTCGCTGAGAGTTCGACCGTCT 37413 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||||||| |||||||| |||||||||||| Sbjct 37412 TCTAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGCGGAATTCCTTCCTTGTCT 37353 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| ||||| |||||||| | |||||| || | ||||| ||| Sbjct 37352 TGAATCTTCGATTTTACATTGTCGATCGTGTCTGATGATTCCACTTCCAGTGTGATGGTC 37293 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || | |||||| Sbjct 37292 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 37261 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||||||||||| ||||| || | ||| | || ||| Sbjct 37244 AGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTGAGAGTGCGGCCGTCT 37185 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || || || || |||||||||||||| ||||||||||||||||| Sbjct 37184 TCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCC 37125 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || || || || || | ||||| ||| Sbjct 37124 TGGATCTTGGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATGGTC 37065 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 37064 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 37033 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | || |||||| || || || | |||||| || | | ||| Sbjct 37710 ACGAAGTCTCAACACCAAATGCAGAGTGCTCTCCTTCTGAATATTGTAGTCAGAAAGAGT 37651 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || || ||||| | ||| ||||| || || |||||||| Sbjct 37650 GCGTCCATCTTCCAATTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGTGGAATACC 37591 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || ||||||||| ||| || || || ||||| || | ||| || || || Sbjct 37590 CTCTTTATCCTGGATCTTTGACTTGACGTTGTCAATAGTGTCCGAAGATTCAACTTCCAA 37531 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || ||||| || ||||| || || Sbjct 37530 CGTAATAGTCTTTCCGGTCAAGGTCTT 37504 Score = 109 bits (120), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | |||||||| ||| || | ||||| || ||||| || || Sbjct 37001 GTAGATTCTTTCTGAATGTTGTAATCACTCAAGGTGCGGCCATCCTCGAGCTGTTTGCCG 36942 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || || |||||||| || || ||||| ||||||||||| || ||||| ||| Sbjct 36941 GCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTT 36882 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| |||||||| || || || || || | ||||| |||||||| |||| Sbjct 36881 ACATTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 36827 >seq341 Length=23579 Score = 118 bits (130), Expect = 3e-21 Identities = 190/271 (70%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| ||| || ||||| || | || || || || | | Sbjct 16404 AACTTTATATTTAATGTTTTCTGTTTTTTCAGGGTTAGCTGGAACAGCTTTCTCAGTATT 16345 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 ||||| ||||||||| | | || ||| ||| ||| || | ||| ||| | || Sbjct 16344 AATAAGATTAGAATTATCAGGGCCTGGTGTACAA-TATATAGCAG--ATAATCAATTATA 16288 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 ||| ||| ||||| || || || | |||||||| |||||| | |||||||| | | | Sbjct 16287 TAACAGTATAATTACAGCACACGCTATAGTTATGATATTCTTTATGGTTATGCCTGCTCT 16228 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||||| ||||| || |||| | | || ||| | | |||| ||| |||||||| || Sbjct 16227 AATAGGAGGTTTTGGTAATTTTCTATTACCATTACTAGTAGGTGGTCCAGATATGGCATT 16168 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTA 7710 ||| || || ||||||||||||||||||||| Sbjct 16167 TCCTAGACTAAACAATATAAGTTTTTGATTA 16137 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 |||| ||||||||| | || |||||| ||||||||| ||||| ||||||||||| Sbjct 15901 AATGCTAATTTATGAAGTCTTATACCAGGACTTCTCATATTTAATATTGTAGTAATAAAA 15960 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| || || | | | |||||||| ||| |||| | |||||| |||||||| Sbjct 15961 TTCATAGCTCCGAGCAAACTACTTATACCTGAAAGGTGTAGAGCAAATATGGCTAAATCT 16020 Query 371485 AC 371486 || Sbjct 16021 AC 16022 >seq82 Length=64492 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||||| || |||| ||||| || || ||||| || |||||||| Sbjct 45252 TTTTGGATGTTGTAATCACTCAGTGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 45311 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || |||||||| || || || |||||||| ||||||||||| ||| || ||| Sbjct 45312 AAGCGCTGTTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCG 45371 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || || | || || || | ||||| ||||||||||| Sbjct 45372 ATTGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 45415 >seq49 Length=72059 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| | || || || || || | ||||| |||| || ||| Sbjct 34565 CGCAGGCGCAGGACCAGGTGCAACGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTG 34624 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| || |||||||| || ||||| ||||| || || || ||| Sbjct 34625 CGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCAGGAGGGATGCCT 34684 Query 225613 TCCTTGTCT-TGGA 225625 ||||||||| |||| Sbjct 34685 TCCTTGTCTGTGGA 34698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517555579742