Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723215.1_202016- 09-12] 893 sequences; 32,602,137 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq151 129 1e-24 seq82 111 4e-19 seq49 96.9 8e-15 seq292 87.8 4e-12 >seq151 Length=50061 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || ||||| || ||||| || | || Sbjct 37036 CAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGAT 37095 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| ||||| || ||||| ||||| ||| Sbjct 37096 ACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAAGGTATTCCTCCCGACCAACAA 37155 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || ||||| || || |||||||| || | ||||| || || ||| || Sbjct 37156 CGTCTCATTTTTGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCAGTGACTACAACATC 37215 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || || || Sbjct 37216 CAAAAAGAATCGACTCTTCACCTGGT 37241 Score = 122 bits (134), Expect = 2e-22 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||||||||| || | || |||||||| || || || Sbjct 36829 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAATGTAAAGTCC 36888 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| ||||| || ||||| || || ||||| || || |||||||| ||| Sbjct 36889 AAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAA 36948 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 |||||||| ||||| | || |||| ||||| ||| | || |||||||| || |||| Sbjct 36949 CAGCTCGAGGATGGCCGCAC-CTTGAGTGATTACAACATTCAGAAAGAATCTACCTTGCA 37007 Query 178124 T 178124 | Sbjct 37008 T 37008 >seq82 Length=64492 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||| ||||| || || || || ||| Sbjct 45430 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGATACAATC 45371 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| || || || ||||| ||||| |||||||| || || | Sbjct 45370 GACAACGTCAAGTCCAAGATCCAAGATAAGGAAGGCATCCCCCCGGACCAACAGCGCTTG 45311 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || || || || ||||| | || || ||||| ||| ||||||| Sbjct 45310 ATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACACTGAGTGATTACAACATCCAAAA 45252 >seq49 Length=72059 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| |||||||| ||||||||||| || ||||||||||| || || || ||| Sbjct 34692 GACAAGGAAGGCATCCCTCCTGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTTGAA 34633 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | ||||| |||| || ||| | || || || ||||| |||| || || Sbjct 34632 GATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCAACGTTGCACCTGGT 34577 >seq292 Length=28646 Score = 87.8 bits (96), Expect = 4e-12 Identities = 192/284 (68%), Gaps = 8/284 (3%) Strand=Plus/Plus Query 214121 TCCCAAAGTTTTTCTGGTTGC---TTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAG 214177 |||| | ||| |||||||||| | ||| ||| |||||| ||||| || ||| Sbjct 10922 TCCCCAGGTTCTTCTGGTTGCTCTTCTTGTTGCA---GGCATCCTTGTAAAGCATATAAG 10978 Query 214178 GCATTCCCA-CCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACG 214236 | | ||||| |||| || || | || || || ||| | | |||||||| || Sbjct 10979 G-AGTCCCAGTCTCGGTCTGTGCTTCTAGGATCGCATACCACAACTTCTGGGCCTTGACC 11037 Query 214237 ACCTTTTTGGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCG 214296 || ||| |||||| || || |||| |||||| || | || |||||| || Sbjct 11038 GTCTGACGACCTCGTCCCTCTTTCTCATACTGTTCATAGAGGGCATCGAATTCCTCGCCA 11097 Query 214297 TAGACATCATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCC 214356 ||||||||| |||| || || ||||| | || ||||| ||| |||| | | || | | Sbjct 11098 TAGACATCAGCAAGGCCCGGTGCCTCATGAGGACAGAACAGAGTCCAGTCTTGGTTCTTC 11157 Query 214357 CTGACTCTTTTCATGAAAAGGTCGGAAGTCCAGATTGCATAAAA 214400 ||| | | ||||||| || || | |||||| | ||||||||| Sbjct 11158 TCGACACGTCTCATGAATAGATCCGGAGTCCAAAGTGCATAAAA 11201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717427434242