Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq73 181 1e-40 >seq73 Length=89549 Score = 181 bits (200), Expect = 1e-40 Identities = 559/857 (65%), Gaps = 6/857 (1%) Strand=Plus/Minus Query 53990 TCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCA 54049 |||| ||||| | || | ||| ||| || | || || ||| |||| || ||||| Sbjct 17429 TCATGAGGACAGAACAGAGTCCAGTCTTGGTTCTTCTCGACACGTCTCATGAATAGATCC 17370 Query 54050 GGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT 54109 ||| ||||||| || ||| | || | || | | || || ||||| |||||| Sbjct 17369 GGAGTCCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCGTGGTTCTTT 17310 Query 54110 TTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACT 54169 | || | || | | | | ||| | ||||| || |||| || |||| | | Sbjct 17309 CTCAGGTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATGGCAAAGGCA 17250 Query 54170 CCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 || || || || || || ||||| || | || | || ||||| || | || | | | Sbjct 17249 CCGGGACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAGACACGAAGC 17190 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 || ||||| | ||||||||| | || |||||||||| |||||| ||| | |||||| Sbjct 17189 ATGGGAATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCAGTAGCACGA 17130 Query 54290 ATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 54348 || | | | | | || || || || || || | || ||||| | || || || Sbjct 17129 ATGCAA-TGAGCGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCATAGCACAAGTCTT 17071 Query 54349 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 54408 | || || || || ||||| || || || || |||||| | | || || || Sbjct 17070 GAGAGTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAAGCATGAGGA 17011 Query 54409 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 54468 || ||| | | ||| || ||||| || | || ||||| ||||| || || || || Sbjct 17010 CAATTGAGGTTGCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGTGAAGCACTT 16951 Query 54469 TTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 54528 | || | || ||||| ||||| || || || || || | ||| || || || Sbjct 16950 CTGGGACATGAGGTTGTAGGTCTCTATCGCCTTCTCGATGTCATCTCCATGGATGCCAAC 16891 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT-GTTTATTTTCAGCA 54587 ||| |||||||| | |||||| || ||||| || | | |||||| | || || |||| Sbjct 16890 TGCCACACGCATGAGCATGTGTTGCGGTCTCTCGGCCA-CTTGTTTGCCAATCTTGAGCA 16832 Query 54588 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647 || ||| |||||||||| || || || || || | ||| |||||||| ||||||| Sbjct 16831 GATATGATCTTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAAA 16772 Query 54648 TAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAA- 54706 || | ||||| || | ||| || | | |||| |||| ||| | || | | Sbjct 16771 CGATGGCCGAGTTCAGCTCATCAGCATGTCTCATAAC-ACATTCATACGTCTCCTGGGAG 16713 Query 54707 ATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACT 54766 || |||||||| || ||| || || || |||| ||||| | | |||| || ||| Sbjct 16712 ATCATCGGAGAGTGCTTCTTGTTCTTGGGGTTGATATAGTAGTAGAGATCCGACACCACC 16653 Query 54767 TCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGA 54826 | ||| |||| || || | ||||| ||||| || ||||| || | || || || Sbjct 16652 GAAGAGAATTGTTTCTTAGTCTGCTTGTGGAGATTGGACACGGCGATACGCGCTGCGAGG 16593 Query 54827 ATGGCATAATCCGGATG 54843 ||||||||||| ||||| Sbjct 16592 ATGGCATAATCGGGATG 16576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710653258000