Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq256 102 8e-17 seq883 100 3e-16 seq377 98.7 1e-15 seq1350 91.5 2e-13 >seq256 Length=205955 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || |||||||| | ||||||||||| || |||| ||| ||||| || || || Sbjct 110689 GACAAGGAAGGCATCCCTCCTGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTTGAA 110748 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || |||||||||||| ||||||||| | ||| |||| || || || Sbjct 110749 GATGGCCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCAACGTTGCACCTGGTCCTG 110808 Query 40903 CGCTTGAGGGGCGG 40916 ||| || |||| || Sbjct 110809 CGCCTGCGGGGAGG 110822 >seq883 Length=160511 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| |||||||| | || || ||| | | Sbjct 37916 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACACTGGAAGTGGAATCATCA 37975 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || || |||| ||||| || || || || ||||||| Sbjct 37976 GACACGATCGACAATGTAAAATCGAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAA 38035 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 |||||| | |||| ||| || ||||| | || |||| || || |||| |||||| ||| Sbjct 38036 CAACGATTGATCTTCGCTGGAAAACAATTAGAAGACGGTCGAACTCTCAGCGACTATAAC 38095 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||||| || | || ||| | || ||| Sbjct 38096 ATCCAGAAGGAGTCGACTCTCCATCTCGTCCTCCGATTGCGAGGTGGC 38143 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| | || ||||| ||| | Sbjct 37688 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 37747 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| || || || || | ||||| Sbjct 37748 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAAGGTATTCCTCCCGACCAA 37807 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||| | || ||||| || || || |||| ||||| |||| ||||||||| Sbjct 37808 CAACGTCTCATTTTTGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCAGTGACTACAAC 37867 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| || || | || || || || || Sbjct 37868 ATCCAAAAAGAATCGACTCTTCACCTGGT 37896 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| ||||||||| |||| ||||| ||| ||| | | | | | | ||| Sbjct 37484 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAATGTAAAGTCC 37543 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| || ||||| || | || || ||||| ||||| | ||| |||||| Sbjct 37544 AAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAA 37603 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | |||||| | | || |||||||| ||||| || | || ||||| Sbjct 37604 CAGCTCGAGGATGGCCGCACCTTGAGTGATTACAACATTCAGAAAGAATCTACCTTGCAT 37663 >seq377 Length=202478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 ||||||| |||||||| || |||||||| | || || |||||||||||||||||| Sbjct 90356 GTACAAACGCGCCGAGGCATCCTTCTGGACAGCTGAAGAAGTGGACCTGTCCAAGGACCT 90415 Query 116707 GAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 ||||||| | || | || || |||| || | ||||| ||||| || || Sbjct 90416 TCACGACTGGCACAATCGTCTCAATGATGACGAACGATACTTCATTTCCCACGTCCTTGC 90475 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 |||||||| || ||||||||| |||||||| || || |||| || ||| || || Sbjct 90476 ATTTTTCGCTGCTTCCGACGGCATTGTCAACGAAAACCTTCTCGAACGGTTCTCTGCTGA 90535 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 || || | | ||||| || || ||||| || Sbjct 90536 AGTCCAAATCCCAGAGGCCCGTTGTTTCTATGG 90568 >seq1350 Length=234104 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| | || ||||| | |||| | | Sbjct 96402 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGATACAATC 96461 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | || || || ||||||||| ||||||| || || | Sbjct 96462 GACAACG-TCAAGTCCAAGATCCAAGATAAGGAAGGCATCCCCCCGGACCAACAGCGCTT 96520 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| || || || || | || || || | || ||||||||||| || Sbjct 96521 GATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACACTGAGTGATTACAACATCCAAAA 96580 Query 40878 GG 40879 || Sbjct 96581 GG 96582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209700646000