Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq73 432 3e-116 seq883 116 3e-21 >seq73 Length=89549 Score = 432 bits (478), Expect = 3e-116 Identities = 1032/1544 (67%), Gaps = 38/1544 (2%) Strand=Plus/Minus Query 22454 TTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513 || || ||||| || || || | ||| || || || ||| |||||||| ||| | || Sbjct 18281 TTGACGACTTGGAATTCACCAGCCAACACACGACGGGAGTAGATGTTGGACGTGTATGGC 18222 Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 ||||| |||| ||||| |||| || |||| ||| || || || ||||| || || | Sbjct 18221 TCGAAGCATTCGTTGTTGCCCAAGATTTGAGAGGTGGATGCAGTAGGCATAGGGGCAACA 18162 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATCGACCAGTCCC 22631 || || ||||| | | || || || | ||| | | || | ||||| ||| |||| Sbjct 18161 AGGAGAGAGTTGCGAACACCATGTTTAGCAATCTCAGCTTTCAATGCATC--CCAATCCC 18104 Query 22632 ACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCG 22691 | ||||| || || || ||||| ||||||||| || || | | || | ||| Sbjct 18103 ATAGATCTGAAGGAGTAACATT---CCACATATCATACTGAAGGATACCTTGTGAGACCG 18047 Query 22692 GGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCA 22751 ||||||| || || || || || ||||| | | | ||| |||||||| ||| || Sbjct 18046 GGCTGCCCTCATAGGTCTCATAGGGACCTTGTTCCTTGGCGAGTTCGCATGACGCAGTCA 17987 Query 22752 ACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACG 22807 || | | || || || ||||| |||| |||| | || ||| || || Sbjct 17986 GAGCTGCATGGTAGATGGTTTCGAAAATTTGGATGTTGAGTTGACGGGCCTCTGGAGAG- 17928 Query 22808 CTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCG 22867 ||| | || | ||||| | ||| || || || | ||||||||| || | ||| Sbjct 17927 ---TCGAAAGGAAGACGCAAAGCAAGGAAGGCATCTGCAAGACCCTGAACACCAAGACCA 17871 Query 22868 ATCGGTCGGTTTTTCAGATTCGACACTT--TTGCCTCGGGCAAAGGATACCAATTCGAAT 22925 | ||||||| | | || | ||| | || ||||||| ||| || | || || Sbjct 17870 ACAGGTCGGTGTCGGAAGTTG--CTCTTCCTGGCTTCGGGCACAGGGTAGTAGTTGATAT 17813 Query 22926 CGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGT 22985 |||| | |||||||||||| || || | || || | |||||| Sbjct 17812 CGATGATCTTGTTCAAGTTTCGAGTGACGACTTGGGTAACTTCATGAAGACGGCCAAAGT 17753 Query 22986 CGTAAACGCCC---GATTGTACAACAAACTTGTTGACG-GCGATCGAGGCAAGATTGCAT 23041 | || | || | ||| | || || | | || | || | ||||| |||||||| Sbjct 17752 CATATTCACCTCGGGCTTGATCGACGAAGGT-TGGAAGAGCCAGAGAGGCGAGATTGCAG 17694 Query 23042 ACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTT 23101 || || | ||| ||| || ||||||| |||||||| || || |||||| | | Sbjct 17693 ACAGCGATCTCATCTGGGGCACTGTACTCGACAATTTCCGTGCACAGATTGGAGCTCCGG 17634 Query 23102 ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTAC 23161 || || |||| || |||||||||| || ||||| | ||||||||| ||||| || Sbjct 17633 ATTGTCCCCAGGTTCTTCTGGTTGCTCTTCTTGTTGCAGGCATCCTTGTAAAGCATATAA 17574 Query 23162 GGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACA 23221 || || || |||||| ||| | || | |||||| ||||| |||| || | || Sbjct 17573 GGAGTCCCGGTCTCGGTCTGTGCTTCTAGGATCGCATACCACAACTTCTGGGCCTTGAC- 17515 Query 23222 CGTCGCACGTACCTG--CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCAC 23279 |||| ||| |||| || |||| ||| |||| || || | || || ||||| | | Sbjct 17514 CGTCTGACG-ACCTCGTCCCTCTTTCTCATACTGTTCATAGAGGGCATCGAATTCCTCGC 17456 Query 23280 CGTA-ACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTC 23337 | || ||| || || ||||| || | | ||| ||||| | ||| |||| | || Sbjct 17455 CATAGACA-TCAGCAAGGCCCGGTGCCT-CATGAGGACAGAACAGAGTCCAGTCTTGGTT 17398 Query 23338 ATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGC 23397 || || || |||||||| || |||||||| |||| || || || |||| || ||||| Sbjct 17397 CTTCTCGACACGTCTCATGAATAGATCCGGAGTCCAAAGTGCATAAAACAAGTCACGGGC 17338 Query 23398 GCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATG 23457 ||| ||||| || || ||| ||||||| ||| | || | || || || ||||| || Sbjct 17337 GCGAACCTCTTCCTTTCCGTGGTTCTTTCTCAGGTTCAGCCAATCGAAGACATCCGCGTG 17278 Query 23458 CCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 ||| ||||| || || | |||||| || || || | ||||||||| ||||| || || || Sbjct 17277 CCATGGCTCCAGATAGATGGCAAAGGCACCGGGACGCTTATTGCCACCCTGGTCCACATA 17218 Query 23518 ACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTAC 23577 |||||| ||||||||| | || | ||||| || | |||||| ||||| | |||| Sbjct 17217 ACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGAGACCATTGGAAGTGCCGTTGGT 17158 Query 23578 GCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCC 23637 || || | | ||||| | || |||| | ||| ||| || || || || || | Sbjct 17157 CCCGGCAATATAGGAACCAGTAGCACGAATGCAATGAGCGTTGAGGCCAATACCGCCAGC 17098 Query 23638 CGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697 | || || ||||| || || || ||||||||||| || ||||| ||||||||||| Sbjct 17097 AGTCTTGGAGATCATAGCACAAGTCTTGAGAGTGTCGTAAATTCCCTCAATGCTGTCCTC 17038 Query 23698 TTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAG 23757 ||| | |||||||||| || || |||| ||| | || || || |||| |||||| Sbjct 17037 TTTCATGTCGACCAAGAAGCATGAGGACAATTGAGGTTGCGGAGTGCCGGCATTGAACAG 16978 Query 23758 TGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGC 23817 || || |||||| || ||| | | ||||| || ||||| || || || || Sbjct 16977 AGTTGGAGAGGCGTGGGTGAAGCACTTCTGGGACATGAGGTTGTAGGTCTCTATCGCCTT 16918 Query 23818 ATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC 23877 || ||||| ||||| || || || | || || ||||| | ||||| ||| |||||||| Sbjct 16917 CTCGATGTCATCTCCATGGATGCCAACTGCCACACGCATGAGCATGTGTTGCGGTCTCTC 16858 Query 23878 GAC--CGTG-ACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 | | | || ||| ||| |||| ||||||||| | || || || || || || || Sbjct 16857 GGCCACTTGTTTGCC---AATCTTGAGCAGATATGATCTTTCCAAAGTCTTGAAGCCGAA 16801 Query 23935 ATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || | ||||| ||||| || |||| || |||||||| |||| Sbjct 16800 GTATTGGTAGTTGAAGTCTCGGTCGTAAACGATGGCCGAGTTCA 16757 >seq883 Length=160511 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| ||||| || ||||| | || || ||| | || Sbjct 37916 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACACTGGAAGTGGAATCATCA 37975 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||||||||||| | ||||| ||||| Sbjct 37976 GACACGATCGACAATGTAAAATCGAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAA 38035 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || | || |||||||| ||||| || |||||| | ||| | ||||| |||||| Sbjct 38036 CAACGATTGATCTTCGCTGGAAAACAATTAGAAGACGGTCGAACTCTCAGCGACTATAAC 38095 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || |||||||| ||||| || || Sbjct 38096 ATCCAGAAGGAGTCGACTCTCCATCTCGTCCT 38127 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| || ||||| || ||||| | || || || | | Sbjct 37688 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 37747 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || |||||||| Sbjct 37748 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAAGGTATTCCTCCCGACCAA 37807 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| || | |||||| ||| | || || || ||| Sbjct 37808 CAACGTCTCATTTTTGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCAGTGACTACAAC 37867 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||||||||||||||| ||||| ||| | || | || |||| Sbjct 37868 ATCCAAAAAGAATCGACTCTTCACCTGGTCCTTCGTCTCCGTGGTGGTA 37916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758181182000