Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq883 109 5e-19 seq377 86.0 6e-12 >seq883 Length=160511 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || |||||||| ||||| || || || Sbjct 37914 CCACCACGGAGACGAAGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTG 37855 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||| || || || ||| | || |||||||| || |||||||| Sbjct 37854 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGA 37795 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | || ||| ||| ||| ||| Sbjct 37794 ATACCTTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGCTGGACTCGACC 37735 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||||||||| | || || ||||| ||||||||| Sbjct 37734 TCAAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCATA 37687 Score = 107 bits (118), Expect = 2e-18 Identities = 131/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| ||||| |||||||| ||||| |||| |||| || ||||||||||| || Sbjct 37656 GTAGATTCTTTCTGAATGTTGTAATCACTCAAGGTGCGGCCATCCTCGAGCTGTTTGCCG 37597 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || | || |||||||| ||||| ||||| |||||||| ||||| ||| | || | || Sbjct 37596 GCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTC-CTGAATCTTGGACTT 37538 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | || | || ||| ||| ||| ||||| | ||| | ||||||||||||| Sbjct 37537 TACATTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 37482 >seq377 Length=202478 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 52837 GAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGC 52896 ||||| || | ||| || || || ||||| || || ||||| || || | || | ||| Sbjct 91066 GAGGCTGTTGTCATCGAGAAGGAATTTTTGACAGATGCTTTGCCTGTCGCTCTGCTTGGC 91125 Query 52897 ATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAG 52956 |||||||| | ||||| | || || ||||| ||||| ||| | || | | Sbjct 91126 ATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTTGCCGACCGTCTTCTCCTTGCC 91185 Query 52957 CTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCG 53016 ||||| | ||| ||||| ||||| | || || || |||||| ||||||| || Sbjct 91186 CTCGGAAACAAGAAGTACTACAATGCCCAGAATCCTTTCAGCTTTATGGACAACATCTCA 91245 Query 53017 CTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 | | ||| || |||||||| ||||||| ||||| || || ||| Sbjct 91246 TTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTCGGTGATTAC 91290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496054853820000