Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq73 185 1e-41 >seq73 Length=89549 Score = 185 bits (204), Expect = 1e-41 Identities = 704/1093 (64%), Gaps = 14/1093 (1%) Strand=Plus/Minus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 |||||| ||||| ||||| | | ||| || || | || | || || ||||| || Sbjct 17661 AATTTCCGTGCACAGATTGGAGCTCCGGATTGTCCCCAGGTTCTTCTGGTTGCTCTTCTT 17602 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| || |||||||| ||||| ||| | ||||| || || || |||| | ||||| || Sbjct 17601 GTTGCAGGCATCCTTGTAAAGCATATAAGGAGTCCCGGTCTCGGTCTGTGCTTCTAGGAT 17542 Query 71871 CGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATT 71929 ||| | ||| | | || | ||||| | | | | ||| | ||||||| || Sbjct 17541 CGCATACCACAACTTCTGG-GCCTTGACCGTCTGACG--ACCTCGTCCCTCTTTCTCATA 17485 Query 71930 GTGTATATAATCGT--TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 ||| ||| | ||||| || || || | ||| | | || || |||| Sbjct 17484 CTGTTCATAGAGGGCATCGAATTCCTCGCCATAGACATCAGCAAGGCCCGGTGCCTCATG 17425 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 ||||| | || | ||| ||| | | | || ||| |||| || ||||| ||| | Sbjct 17424 AGGACAGAACAGAGTCCAGTCTTGGTTCTTCTCGACACGTCTCATGAATAGATCCGGAGT 17365 Query 72048 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 72107 |||||| || ||| | || | || | | ||| || ||||| |||||| | || Sbjct 17364 CCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCGTGGTTCTTTCTCAG 17305 Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 | || | | | | ||| | ||||| || |||| || ||||| | | || || Sbjct 17304 GTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATGGCAAAGGCACCGGG 17245 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || || || || ||||| || | || | || ||||| || | || | | ||| || Sbjct 17244 ACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAGACACGAAGCATGGG 17185 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 72285 ||| | ||||||||| | || |||||||||| |||||| ||| | |||||||| | Sbjct 17184 AATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCAGTAGCACGAATGCA 17125 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 || |||| | || || || || || | || ||||| | || || || | Sbjct 17124 ATGAGCGTTGA--GGCCAATACCGCCAGCAGTCTTGGAGATCATAGCACAAGTCTTGAGA 17067 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 || || || || ||||| || || || || |||||| | | || || |||| | Sbjct 17066 GTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAAGCATGAGGACAAT 17007 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 || | | ||| || ||||| || | || ||||| ||||| || || || || | Sbjct 17006 TGAGGTTGCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGTGAAGCACTTCTGG 16947 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 |||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 16946 GACATGAGGTTGTAGGTCTCTATCGCCTTCTCGATGTCATCTCCATGGATGCCAACTGCC 16887 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATT-TTCAACAAGTA 72584 |||||||| | ||| || || ||||| || | | |||||| | | || | || || Sbjct 16886 ACACGCATGAGCATGTGTTGCGGTCTCTCGGCCA-CTTGTTTGCCAATCTTGAGCAGATA 16828 Query 72585 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| |||||||||| || || || || || | ||| |||||||| ||||||| || Sbjct 16827 TGATCTTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAAACGAT 16768 Query 72645 AACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-ATAA 72703 |||| || || | ||| || | | |||| | || ||| | || | | || | Sbjct 16767 GGCCGAGTTCAGCTCATCAGCATGTCTCATAAC-ACATTCATACGTCTCCTGGGAGATCA 16709 Query 72704 TCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCAC 72763 ||||||| || ||| || || || || | ||||| | | | |||| || ||| | Sbjct 16708 TCGGAGAGTGCTTCTTGTTCTTGGGGTTGATATAGTAGTAGAGATCCGACACCACCGAAG 16649 Query 72764 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGG 72823 ||| |||| || || | |||||| ||||| || ||||| || | || || || |||| Sbjct 16648 AGAATTGTTTCTTAGTCTGCTTGTGGAGATTGGACACGGCGATACGCGCTGCGAGGATGG 16589 Query 72824 CATAATCTGGATG 72836 ||||||| ||||| Sbjct 16588 CATAATCGGGATG 16576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671126825871000