Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq377 114 1e-20 seq883 107 2e-18 >seq377 Length=202478 Score = 114 bits (126), Expect = 1e-20 Identities = 252/368 (68%), Gaps = 11/368 (3%) Strand=Plus/Plus Query 50493 AGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGACGAAGGAATGCA 50552 |||| | ||||| ||| | ||||| || ||| | || ||||| || || || ||||| Sbjct 90930 AGGCCTTATGCCAGGCTTGACGTTCTCGAATGAGCTCATCTCGCGTGATGAGGGTATGCA 90989 Query 50553 CACAGACTTTGCGTGT-TTGTACTACAATACGCGCGTAAATGAAAAATTATCATACGAAA 50611 || |||||||| ||| || | | ||| || | || | | || || | ||| Sbjct 90990 TACCGACTTTGCTTGTCTTCTGATGCAACACC----TCAA-GTATAAGCCCGATCCCAAA 91044 Query 50612 CA-ATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCT 50670 | || |||||| ||| || || || | |||||| || || ||||| || || ||| Sbjct 91045 CTCATCGAGGACATCATCACCGAGGCTGTTGTCATCGAGAAGGAATTTTTGACAGATGCT 91104 Query 50671 TTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTT 50730 || || || || || | ||||||||||| | ||||| | || |||||||| ||| Sbjct 91105 TTGCCTGTCGCTCTGCTTGGCATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTT 91164 Query 50731 GCAGACAG-ATTGTTGTTGCAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTT 50789 || ||| | || | |||| || ||| | ||| ||||| ||||| | || |||| Sbjct 91165 GCCGACCGTCTTCTCCTTGC-CCTCGGAAACAAGAAGTACTACAATGCCCAGAA-TCCTT 91222 Query 50790 TCCG-TTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAG 50848 || | |||||| | ||||| || |||| ||| || |||||||| ||||| | ||||| | Sbjct 91223 TCAGCTTTATGGACAACATCTCATTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTCG 91282 Query 50849 GCGAATAC 50856 | || ||| Sbjct 91283 GTGATTAC 91290 >seq883 Length=160511 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||||||||| |||||||| || || | |||| |||||||||||| Sbjct 37890 TGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTGAGAGTGCGGCCGTCTTCGAGTTGC 37831 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || ||| | || |||||||| || |||||||| || ||||| ||||| || || Sbjct 37830 TTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCCTGGATCTTG 37771 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | || || ||| || || |||| ||| | ||||||||||| Sbjct 37770 GACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCGGTA 37711 Query 143162 AATGTTTTTACGAATATTTGCATA 143185 | || || ||||| ||||||||| Sbjct 37710 AGAGTCTTGACGAAGATTTGCATA 37687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | ||||||||||| || ||||||||||| |||| |||| || ||| Sbjct 37668 ACCAAATGCAAGGTAGATTCTTTCTGAATGTTGTAATCACTCAAGGTGCGGCCATCCTCG 37609 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || ||||| || || | || |||||||| ||||| ||||| |||||||| ||||| | Sbjct 37608 AGCTGTTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGA 37549 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || |||| | || | || || ||| || || || | || | |||||| Sbjct 37548 ATCTTGGACTTTACATTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 37489 Query 143156 CCGGTCAATG 143165 ||||||| || Sbjct 37488 CCGGTCACTG 37479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005051922000