Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq73 129 9e-25 >seq73 Length=89549 Score = 129 bits (142), Expect = 9e-25 Identities = 327/489 (67%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| |||||||| || || || || | ||| |||| |||| || ||||||||||| Sbjct 17227 CAGGGTGGCAATAAGCGTCCCGGTGCCTTTGCCATCTATCTGGAGCCATGGCACGCGGAT 17286 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || | | | || | || ||| || ||||||| || ||| | ||| Sbjct 17287 GTCTTCGATTGGCTGAACCTGAGAAAGAACCACGGAAAGGAAGAGGTTCGCGCCCGTGAC 17346 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AACGACGGTGGC 97052 |||||||||||||| ||| || ||| | ||||||| || ||| || || | Sbjct 17347 TTGTTTTATGCACTTTGGACTCCGGATCTATTCATGAGACGTGTCGAGAAGAACCAAG-- 17404 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || | || || | | |||| || || | ||| || ||||| || Sbjct 17405 -ACTGGACTCTGTTCTGTCCTCATGAGGCACCGGGCCTTGCTGATGTCTATGGCGAGGAA 17463 Query 97113 TTTGAGGCCAAGTAC--ACGGCCTACGAGCAAGAGGGCCGATA-CGTGAGACGAGTCGAT 97169 || || ||| || || | || ||| ||||||| ||| ||| ||||| ||| | Sbjct 17464 TTCGATGCCCTCTATGAACAG--TATGAGAAAGAGGGACGAGGTCGTCAGACG-GTCAAG 17520 Query 97170 GCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACAT 97228 || | |||| | |||| | || ||| | || ||| ||||| || ||||| || || Sbjct 17521 GCCC-AGAAGTTGTGGTATGCGATCCTAGAAGCACAGACCGAGACCGGGACTCCTTATAT 17579 Query 97229 TCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 || ||||||||| || || || |||||||| || |||| || ||| | | Sbjct 17580 GCTTTACAAGGATGCCTGCAACAAGAAGAGCAACCAGAAGAACCTGGGGACAATCCGGAG 17639 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGT 97348 |||||||||||||||||||||||| |||||| | || || |||| || || ||| Sbjct 17640 CTCCAATCTGTGCACGGAAATTGTCGAGTACAGTGCCCCAGATGAGATCGCTGTCTGCAA 17699 Query 97349 TCTGGCATC 97357 ||| || || Sbjct 17700 TCTCGCCTC 17708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741045536721000