Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1281 176 7e-40 seq1241 147 3e-31 seq41 138 2e-28 >seq1281 Length=2074 Score = 176 bits (194), Expect = 7e-40 Identities = 202/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||||| | || || |||||||| || ||||||||||| |||| Sbjct 1453 CGCCAAGCGTCACCGCAAGATCT-TACGTGACAACATCCAGGGTATCACCAAGCCCGCTA 1395 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| ||||||||| |||| | || |||| || |||| Sbjct 1394 TCCGTCGTCTCGCACGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAGGAGA 1335 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | |||| ||||||| || || |||| |||||| || || || | Sbjct 1334 CCCGTGGTGTTCTTAAGACCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACATACACTG 1275 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || | ||||| |||||||| | || | ||||| || | || || || | Sbjct 1274 AGCACGCCAAGAGAAAGACCGTCACCTCGCTCGACGTTGTCTACGCCCTCAAGCGCCAGG 1215 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| || ||||| Sbjct 1214 GCCGTACCCTCTACGGTTTCGGTGGTTAA 1186 >seq1241 Length=131115 Score = 147 bits (162), Expect = 3e-31 Identities = 121/145 (83%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATC-GCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||||| | |||||| | || || ||||||||||| ||||||||||| |||| Sbjct 2386 CGCTAAGCGTCATCGGAAGATCT-TGCGCGACAACATCCAAGGTATCACCAAGCCCGCTA 2444 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| || ||||||||||| ||||||||| |||||| || ||||||| |||| Sbjct 2445 TTCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTGCCATGATCTATGAGGAGA 2504 Query 16551 TTCGTGATGTTTTGAAGATCTTCCT 16575 |||| ||| ||||||| |||||| Sbjct 2505 CCCGTGGTGTCTTGAAGACCTTCCT 2529 >seq41 Length=92116 Score = 138 bits (152), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||| |||| |||||| || ||||| || || |||||||| || || | Sbjct 5132 CGCCAAGCGTCATCGAAAGAT-TCTTCGCGACAACATTCAGGGTATCACCAAACCTGCCA 5190 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| |||||||||||||| ||||||||| |||| | || |||| ||||| | Sbjct 5191 TTCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAAGAAA 5250 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | || ||||||| | | || |||| ||||||| || ||| || | Sbjct 5251 CTCGCGGCGTCCTCAAATCCTTCCTCGAATCTGTCATCCGTGATGCTGTCACCTACACTG 5310 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTC 16638 | ||||| || | ||||| ||||| || Sbjct 5311 AACACGCAAAGAGAAAGACCGTCACTTC 5338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073851397175