Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq73 197 2e-45 >seq73 Length=89549 Score = 197 bits (218), Expect = 2e-45 Identities = 679/1046 (65%), Gaps = 12/1046 (1%) Strand=Plus/Minus Query 62846 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 || || ||||| ||||| || |||||||| ||||| || | ||||| || || || || Sbjct 17615 TGGTTGCTCTTCTTGTTGCAGGCATCCTTGTAAAGCATATAAGGAGTCCCGGTCTCGGTC 17556 Query 62906 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT 62964 || | ||||| ||||| | ||| | | || | ||||| | | | | ||| | Sbjct 17555 TGTGCTTCTAGGATCGCATACCACAACTTCTGG-GCCTTGACCGTC--TGACGACCTCGT 17499 Query 62965 TTCTCTTTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 ||||||| ||| ||| ||| | ||||| || || || | |||| | || Sbjct 17498 CCCTCTTTCTCATACTGTTCATAGAGGGCATCGAATTCCTCGCCATAGACATCAGCAAGG 17439 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || || |||| ||||| | || | ||| ||| || | || || ||| |||| Sbjct 17438 CCCGGTGCCTCATGAGGACAGAACAGAGTCCAGTCTTGGTTCTTCTCGACACGTCTCATG 17379 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || ||||| ||| ||||||| || ||| | || | || | | || || ||||| Sbjct 17378 AATAGATCCGGAGTCCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCG 17319 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 |||||| | || | || | | | | ||| | ||||| || |||| || ||| Sbjct 17318 TGGTTCTTTCTCAGGTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATG 17259 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | | || || || || || || ||||| || | || | || ||||| || | Sbjct 17258 GCAAAGGCACCGGGACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAG 17199 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 || | | ||| ||||| | ||||||||| || || |||||||| | |||||| ||| Sbjct 17198 ACACGAAGCATGGGAATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCA 17139 Query 63323 CTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | |||||||| | | | | | || || || || || || | || ||||| | || Sbjct 17138 GTAGCACGAATGCAA-TGAGCGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCATAGC 17080 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 63441 || || | || || || || ||||| || || || || |||||| | | || Sbjct 17079 ACAAGTCTTGAGAGTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAA 17020 Query 63442 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGT 63501 || |||| ||| | | ||| || ||||| || | || ||||| ||||| || Sbjct 17019 GCATGAGGACAATTGAGGTTGCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGT 16960 Query 63502 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATG 63561 || || || | || | || ||||| ||||| || || || || || | ||| Sbjct 16959 GAAGCACTTCTGGGACATGAGGTTGTAGGTCTCTATCGCCTTCTCGATGTCATCTCCATG 16900 Query 63562 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT-GTTTA 63620 || || ||||| |||||||| | |||||| || ||||| || | | |||||| | | Sbjct 16899 GATGCCAACTGCCACACGCATGAGCATGTGTTGCGGTCTCTCGGCCA-CTTGTTTGCCAA 16841 Query 63621 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63680 | || | || || ||| |||||||||| || || || || || | ||| ||||||| Sbjct 16840 TCTTGAGCAGATATGATCTTTCCAAAGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTC 16781 Query 63681 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 63740 | ||||||| || ||||||| || | ||| || | | |||| |||| ||| Sbjct 16780 GGTCGTAAACGATGGCCGAGTTCAGCTCATCAGCATGTCTCATAAC-ACATTCATACGTC 16722 Query 63741 TACTTGAA-ATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCC 63799 | || | | || || ||| | || ||| || || || |||| ||||| | | | |||| Sbjct 16721 TCCTGGGAGATCATCGGAGAGTGCTTCTTGTTCTTGGGGTTGATATAGTAGTAGAGATCC 16662 Query 63800 TCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859 || ||| | ||| |||| || || | ||||| ||||| || ||||| || | Sbjct 16661 GACACCACCGAAGAGAATTGTTTCTTAGTCTGCTTGTGGAGATTGGACACGGCGATACGC 16602 Query 63860 GCGGCTAGAATGGCATAATCCGGATG 63885 || || || ||||||||||| ||||| Sbjct 16601 GCTGCGAGGATGGCATAATCGGGATG 16576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620317410000