Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq883 140 3e-28 >seq883 Length=160511 Score = 140 bits (154), Expect = 3e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || ||| ||||||| | ||| || | || Sbjct 37484 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAATGTAAAGTCC 37543 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| |||||||| || ||||| || |||||||||||||| || || ||||||||| Sbjct 37544 AAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAA 37603 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| | |||||||||||||| |||||||| ||| | ||| Sbjct 37604 CAGCTCGAGGATGGCCGCACCTTGAGTGATTACAACATTCAGAAAGAATCTACCTTGCAT 37663 Query 22423 TTAGT 22427 || || Sbjct 37664 TTGGT 37668 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || |||||||||| || || ||| | Sbjct 37688 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 37747 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || || |||||||| |||||||| ||||| ||| Sbjct 37748 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAAGGTATTCCTCCCGACCAA 37807 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||||||||| || | || || |||||| || || |||||| Sbjct 37808 CAACGTCTCATTTTTGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCAGTGACTACAAC 37867 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 37868 ATCCAAAAAGAATCGAC 37884 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| || ||||||||| | | Sbjct 37916 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACACTGGAAGTGGAATCATCA 37975 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | ||| || |||||||||||||| || ||||| || || ||| Sbjct 37976 GACACGATCGACAATGTAAAATCGAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAA 38035 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || || || ||||| ||||| || || || || ||| || ||| Sbjct 38036 CAACGATTGATCTTCGCTGGAAAACAATTAGAAGACGGTCGAACTCTCAGCGACTATAAC 38095 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | || | |||||||| || || Sbjct 38096 ATCCAGAAGGAGTCGACTCTCCATCTCGTCCTCCGATTGCGAGGTGG 38142 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || ||||| || || | || | ||||| ||| | | Sbjct 38144 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACTATTACGTTGGAAGTTGAATCTTCG 38203 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||| || || || || |||||||||||||| |||||| Sbjct 38204 GACACTATTGACAACGTCAAGTCAAAGATCCAGGATAAAGAGGGTATTCCACCGGATCAA 38263 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| ||||| || || || ||| ||||| | || || ||||| Sbjct 38264 CAGCGATTGATCTTTGCAGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAT 38323 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||| | ||||| || ||| || | || || ||| Sbjct 38324 ATTCAGAAGGAGAGCACTCTGCATTTGGTGTTGAGACTTCGTGGTGGT 38371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419720454733375