Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq883 163 5e-35 seq1350 138 2e-27 seq738 127 4e-24 seq256 111 3e-19 >seq883 Length=160511 Score = 163 bits (180), Expect = 5e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| || ||||||||||| ||| ||| || | || |||||||| || Sbjct 38118 TGGAGAGTCGACTCCTTCTGGATGTTATAGTCGCTGAGAGTTCGACCGTCTTCTAATTGT 38059 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | || ||||||||| || ||||| |||||||||||||||||||| Sbjct 38058 TTTCCAGCGAAGATCAATCGTTGTTGGTCCGGCGGAATTCCTTCCTTGTCTTGAATCTTC 37999 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || ||||| ||||||| |||||| ||||||| |||||||| || || || Sbjct 37998 GATTTTACATTGTCGATCGTGTCTGATGATTCCACTTCCAGTGTGATGGTCTTGCCAGTC 37939 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || || ||||| Sbjct 37938 AAGGTCTTGACAAAGATTTGCAT 37916 Score = 147 bits (162), Expect = 4e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || || || |||||||||||||| || || | Sbjct 37914 CCACCACGGAGACGAAGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTG 37855 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| ||||| || ||||| | |||||||||||| ||| Sbjct 37854 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGA 37795 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTAC 68413 || ||||||||||| || ||||| | ||| || |||||||| || |||| | || || Sbjct 37794 ATACCTTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATC-GCTGGACTCGAC 37736 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || ||||||||||| || ||||| Sbjct 37735 CTCAAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 37688 Score = 118 bits (130), Expect = 2e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | ||||| || | || || ||||| || ||||| ||||| Sbjct 37686 CCACCACGGAGGCGAAGGACCAAATGCAAGGTAGATTCTTTCTGAATGTTGTAATCACTC 37627 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | ||| || |||||||| ||||| | |||||| || || ||| Sbjct 37626 AAGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGA 37567 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| |||||||| | ||| || |||||||| || ||| || || || Sbjct 37566 ATGCCTTCCTTGTCCTGAATCTTGGACTTTACATTGTCGATGGTATC-GCTGGACTCGAC 37508 Query 68414 TTCCAAGGTGATGGTTTTTCCCGT 68437 || | ||||||||| || || || Sbjct 37507 CTCGAGGGTGATGGTCTTGCCGGT 37484 >seq1350 Length=234104 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| ||||| ||||| | ||||| || | ||||| |||||||| || Sbjct 96580 TTTTGGATGTTGTAATCACTCAGTGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 96521 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||||| || || ||||||||||| ||||| ||||| | ||||||| ||| Sbjct 96520 AAGCGCTGTTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCG 96461 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | || || || || | ||||||||| || |||||||||||||||||||| Sbjct 96460 ATTGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 96402 >seq738 Length=55810 Score = 127 bits (140), Expect = 4e-24 Identities = 329/499 (66%), Gaps = 2/499 (0%) Strand=Plus/Plus Query 176030 GCGCTTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTAAATCC 176089 |||||| | ||| || |||||||||| ||| |||||| || || || || | || Sbjct 19389 GCGCTTGAGATTCTCCACGATATCCTCGGGATTGTAATTGGGGATAGAAGAACTCCAGCC 19448 Query 176090 TGTTCCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTC 176149 |||||| || || | ||||| ||||| | | || | | || ||||| | || Sbjct 19449 TGTTCCGATACCGTCGGCACCATTGACCAGAATCATGGGAACGACTGGCACATATAACTC 19508 Query 176150 CGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGCTCGTCGGCCTTGTG 176209 |||||| ||| | | ||||||| | ||| ||| ||| | || || |||| ||| Sbjct 19509 CGGTTCGATCTTCTTGTCGTCATCAGTGTTGTAAGTCAAGAGAGGTTCATCAGCCTGGTG 19568 Query 176210 GAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTC 176269 ||| | | ||||| | ||| ||||| | ||||| ||||| | ||| ||| ||| Sbjct 19569 GAAGAGCTTCCGGGCGAAGGGAGACAGACGGGTGAAAATATATCGAGCGCTAGCAGAGTC 19628 Query 176270 CTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATT 176329 | ||||| ||| || | ||||| || ||| || ||||| |||| || || Sbjct 19629 GCTACCTCCTTGATTTCGCGTGCCGAACTGGCCGGATGGCTCGAGCAAGTTGACATTGTT 19688 Query 176330 CGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTG 176389 || || || | | ||| |||| || || |||| |||||| |||||||||||||| Sbjct 19689 GGATCCGACAAAATTTTGAGCCAGACCAACGATGGTCTGCTGGAGCGACGCCTCGCCGTG 19748 Query 176390 GTGAT-AGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTA 176448 |||| ||||| | ||| ||| ||||| | | |||||||| || |||| Sbjct 19749 ATGATAAGCCGTCATTC-CACCGACAAGACCGGCGAGTTCGGCGACTTTCATATCTTTCT 19807 Query 176449 CGAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGA 176508 | ||| || || || | ||||| || ||| ||||| ||||||| ||||||| Sbjct 19808 TCAAGTTTCGTTTGAAGCAAGCGAACATAACCTTTCGCTGACCAGGCTTCAACCCATCGA 19867 Query 176509 CGACCGACGGAATGGAACG 176527 | || || || || || || Sbjct 19868 CAACAGAGGGGATCGATCG 19886 >seq256 Length=205955 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || ||||||| |||| ||| | ||| ||||| || || ||||| || ||||| Sbjct 110823 TCCTCCCCGCAGGCGCAGGACCAGGTGCAACGTTGACTCCTTCTGAATGTTGTAGTCGGA 110764 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||||| |||||||| || || | ||| ||||| || || Sbjct 110763 CAGAGTGCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCAGGAGG 110704 Query 68354 AATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 110703 GATGCCTTCCTTGTCT 110688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921605407587000