Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq883 154 3e-32 seq738 102 2e-16 seq1350 100 7e-16 seq377 87.8 4e-12 >seq883 Length=160511 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || ||||| | || | ||| | ||||| || || || ||||| ||||| Sbjct 38373 TGACCACCACGAAGTCTCAACACCAAATGCAGAGTGCTCTCCTTCTGAATATTGTAGTCA 38314 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || |||||||| ||||| ||||| || ||||| ||||||| ||||||||| | Sbjct 38313 GAAAGAGTGCGTCCATCTTCCAATTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGT 38254 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || |||||||||||||| || | || ||||| || |||| || ||||| Sbjct 38253 GGAATACCCTCTTTATCCTGGATCTTTGACTTGACGTTGTCAATAGTGTCCGAAGATTCA 38194 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||| || ||||| ||||||| |||||||| || |||||||| Sbjct 38193 ACTTCCAACGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 38144 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || |||| || |||||||||||| || ||||| | Sbjct 37914 CCACCACGGAGACGAAGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTG 37855 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | ||| || || || || || ||||| ||||| || Sbjct 37854 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGA 37795 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || | ||||| || || || | |||||| || || || Sbjct 37794 ATACCTTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGCTGGACTCGACC 37735 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 37734 TCAAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 37688 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || | || || |||||||| | || || || ||||| ||||||| Sbjct 38146 CATG-CCACCTCGCAATCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTATAGT 38088 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 || ||| || || |||||||||||||||||||| |||||||||| || ||||| Sbjct 38087 CGCTGAGAGTTCGACCGTCTTCTAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCG 38028 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || |||||||| || || || || |||| ||| || || || || | || |||| Sbjct 38027 GCGGAATTCCTTCCTTGTCTTGAATCTTCGATTTTACATTGTCGATCGTGTCTGATGATT 37968 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| || ||||| ||||| || |||| |||||||| || || ||||| Sbjct 37967 CCACTTCCAGTGTGATGGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 37916 >seq738 Length=55810 Score = 102 bits (112), Expect = 2e-16 Identities = 252/373 (68%), Gaps = 16/373 (4%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 ||||| || ||||| || | | ||||||| |||||||| || ||| | |||||| | Sbjct 20269 ACGATCGGGGTGATAAATTCCACCAAGAACTTTGGAATTTGGAGCAGACT-GGGAAATTG 20327 Query 326024 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081 || || || || || || | | || ||||||| |||| ||| |||| || | Sbjct 20328 AACT-TGCAAGAAATTAATCAACAAGCCTTTAATGTGACTTCCATCATGATCCTGATCTG 20386 Query 326082 TCATGATCATCACATGACCGTAACGAAG--CGAGGACGTGTCTTTGTACACTTTACCGGT 326139 |||||||||||| || || || ||||| || || || || |||| ||||| | Sbjct 20387 TCATGATCATCAAGTGTCCATAGCGAAGGCCGTGG--GTATCGGTGTAGACTTTCTTGTG 20444 Query 326140 TTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGCCA 326198 || || ||||| | | ||||| | ||| || || ||||||| | ||| | | Sbjct 20445 CTGGAGACCGAGGAAGTTTTTGATGTTCTG-AATCTCGGCGTTCTTTGAGATCTGATCAA 20503 Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258 | ||||| || ||||| ||||| ||||| || || || || || || ||| | ||| Sbjct 20504 CTGATGCGTCTCGGACATTCAAAAGTTTACCGCGCAGGGGAAAGACGCCAAACAAATCGG 20563 Query 326259 GACCGACCACGGACAGCCCTGCGATTGCAAG---TGTCGCTGCGGAATCCCCCTCCGTCA 326315 |||| || || || | || || |||||||| | | ||| ||||| ||||| |||| Sbjct 20564 GACCAACGACCGATCGTCCGGCCATTGCAAGACCTTTGGCT---GAATCTCCCTCAGTCA 20620 Query 326316 GAATGAGAGTGCA 326328 | || | ||||| Sbjct 20621 GTATCAAGGTGCA 20633 >seq1350 Length=234104 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || || || || || || || || || | ||| || || ||||||||| Sbjct 96580 TTTTGGATGTTGTAATCACTCAGTGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 96521 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | |||||||| ||||| ||||| ||||| ||||| || | || ||||| || Sbjct 96520 AAGCGCTGTTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCG 96461 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | |||| ||| || || || || ||||| ||||| || || || ||||||||||| Sbjct 96460 ATTGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 96401 Query 288466 ATCTGCATT-ATGTT 288479 | ||| || ||||| Sbjct 96400 CTGTGCGTTCATGTT 96386 >seq377 Length=202478 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 269147 CTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTA 269206 || || | || ||||| ||| | || ||| | |||||||| || ||||| || || ||| Sbjct 91115 CTCTGCTTGGCATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTTGCCGACCGTC 91174 Query 269207 TCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGG 269266 | || || ||||| | |||| |||||| | ||||||| ||| |||||||| Sbjct 91175 TTCTCCTTGCCCTCGGAAACAAGAAGTACTACAATGCCCAGAATCCTTTCAGCTTTATGG 91234 Query 269267 AACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 | || || | | |||||||| ||||||||||| ||||||||| | || || || Sbjct 91235 ACAACATCTCATTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTCGGTGATTACCA 91292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179632106375050