Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq738 113 1e-19 seq1449 107 4e-18 seq377 102 2e-16 >seq738 Length=55810 Score = 113 bits (124), Expect = 1e-19 Identities = 365/558 (65%), Gaps = 18/558 (3%) Strand=Plus/Plus Query 297169 ACCTTTGAATCCTCGATACCACGGTTTCAT----TTCGACGAGATCTTCTCCAGCAATCA 297224 ||| |||||||| ||| |||| |||| ||| ||| || ||||| || || || Sbjct 19332 ACCCTTGAATCCACGAAACCATGGTTGCATGGGCTTCCAC----TCTTCACCCGCCATTT 19387 Query 297225 ATCGCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAAC 297284 ||||| | || || ||||| || | ||||||||| | |||||| || ||| | Sbjct 19388 TGCGCTTGAGATTCTCCACGATATCCTCGGGATTGTAATTGGGGATAGAAGAACTCCAGC 19447 Query 297285 CGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACT 297344 | || ||||| || | |||||| |||||||| | |||| || |||||||| ||| Sbjct 19448 CTGTTCCGATACCGTCGGCACCATTGACCAGAATCATGGGAACGACTGGCACATATAACT 19507 Query 297345 CTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGA 297404 | ||||||||||| | |||||||| || ||| ||| || || | | | Sbjct 19508 CCGGTTCGATCTTCTTGTCGTCATCAGTGTTGTAAGTCAAGAGAGGTTCATCAGCCTGGT 19567 Query 297405 CGAAAACCTGTCGAGTCTGAGGG-TTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGA 297463 ||| | || || | | |||| ||| |||||||||||||| || || || Sbjct 19568 GGAAGAGCT-TCCGGGCGAAGGGAGACAGACGGGTGAAAATATATCGAGCGCTAGCAGAG 19626 Query 297464 TCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTA 297523 || |||| || || || || ||||||||||| ||| | | |||||| || Sbjct 19627 TCGCTACCTCCTTGATTTCGCGTGCCGAACTGGCCGGATGGCTCGAGCAAGTTGACATTG 19686 Query 297524 TTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCA 297583 ||| ||||||| ||| || || || ||||||||| || || || || ||||| Sbjct 19687 TTGGATCCGACAAAATTTTGAGCCAGACCAACGATGGTCTGCTGGAGCGACGCCTCGCCG 19746 Query 297584 TGGTGAT-AGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGT 297642 || |||| || || || | | | || |||| || | || || |||| || | Sbjct 19747 TGATGATAAGCCGTCATTC-CACCGACAAGACCGGCGAGTTCGGCGACTTTCATATCTTT 19805 Query 297643 CGTCAAATTGCGCTTGA---AAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACC 297699 | |||| || || |||| |||| ||| ||| || || || ||| ||| || || || Sbjct 19806 CTTCAAGTTTCGTTTGAAGCAAGC-GAACATA--ACCTTTCGCTGACCAGGCTTCAACCC 19862 Query 297700 ATCAACGACCGACGGAAT 297717 ||| || || || || || Sbjct 19863 ATCGACAACAGAGGGGAT 19880 Score = 105 bits (116), Expect = 1e-17 Identities = 253/373 (68%), Gaps = 16/373 (4%) Strand=Plus/Plus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 ||||| || ||||| || | | ||||||| |||||||| || ||| | |||||| | Sbjct 20269 ACGATCGGGGTGATAAATTCCACCAAGAACTTTGGAATTTGGAGCAGACT-GGGAAATTG 20327 Query 298145 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 || || || || || || | | || ||||||| |||| ||| |||| || | Sbjct 20328 AACT-TGCAAGAAATTAATCAACAAGCCTTTAATGTGACTTCCATCATGATCCTGATCTG 20386 Query 298203 TCATGATCATCACATGACCGTAACGAAG--CGAGGACGTGTCTTTGTACACTTTACCGGT 298260 |||||||||||| || || || ||||| || || || || |||| ||||| | Sbjct 20387 TCATGATCATCAAGTGTCCATAGCGAAGGCCGTGG--GTATCGGTGTAGACTTTCTTGTG 20444 Query 298261 TTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTGCCA 298319 || || ||||| | | ||||| | | ||| | || ||||||| | ||| | | Sbjct 20445 CTGGAGACCGAGGAAGTTTTTGAT-GTTCTGAATCTCGGCGTTCTTTGAGATCTGATCAA 20503 Query 298320 CGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 298379 | ||||| || ||||||||||| ||||| || || || || || || ||| | ||| Sbjct 20504 CTGATGCGTCTCGGACATTCAAAAGTTTACCGCGCAGGGGAAAGACGCCAAACAAATCGG 20563 Query 298380 GACCGACCACGGACAGCCCTGCGATTGCAAG---TGTCGCTGCGGAATCCCCCTCCGTCA 298436 |||| || || || | || || |||||||| | | ||| ||||| ||||| |||| Sbjct 20564 GACCAACGACCGATCGTCCGGCCATTGCAAGACCTTTGGCT---GAATCTCCCTCAGTCA 20620 Query 298437 GAATGAGAGTGCA 298449 | || | ||||| Sbjct 20621 GTATCAAGGTGCA 20633 >seq1449 Length=96978 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTC 332869 |||||| || ||||| || |||| | ||| || || | || || || || || || Sbjct 58893 AATGATGACTACACCACCCTCAAACTCCTTGAGAGCCTTGGACAGAGCGCCCAGCGAGTC 58952 Query 332870 ACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAGC 332929 ||||||| | ||||||||||||| || | |||||||| ||| || |||||||| | || Sbjct 58953 CCGGTCAAGGTAGTTGGTCGGTTCATCGAGAACGATCAAGTGAGGACGTTGCCAT-GTGC 59011 Query 332930 -AGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 ||| ||| ||| | || | ||||| ||||| |||||||| |||||||| |||| Sbjct 59012 AAGCAGCGAGAACGACCTTGACACGCTGCCCACCAGACAGACCACGCATGCGAGAGTGAG 59071 Query 332989 TTGTAAATTCAGGGTCGAGACCAACATTTGC 333019 | | ||| | ||||||||| | ||| || Sbjct 59072 AGATGAGTTCCGCGTCGAGACCGAAATTGGC 59102 >seq377 Length=202478 Score = 102 bits (112), Expect = 2e-16 Identities = 171/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGC--GACGCTATTCCATGCC 243559 |||||||| || || |||| | ||| |||||||| |||| || ||| | || || | Sbjct 91057 ATCATCACCGAGGCTGTTGTCATCGAGAAGGAATT--TTTGACAGATGCTTTGCC-TGTC 91113 Query 243560 GG-CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGC 243618 | || ||||||||||| | |||| ||| ||| || || || ||||| |||||||| Sbjct 91114 GCTCTGCTTGGCATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTTGCCGACCGT 91173 Query 243619 ATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATG 243678 || || | || || || | |||| ||||| || |||| || || ||||||| Sbjct 91174 CTTCTCCTTGCCCTCGGAAACAAGAAGTACTACAATGCCCAGAATCCTTTCAGCTTTATG 91233 Query 243679 GAGCTCATTTCGCTTCAAGGGAAA-ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||| || || |||||| || ||||||||||| ||||||||| ||||||| || Sbjct 91234 GACAACATCTC-ATTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTCGGTGATTACCA 91292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102859157291250