Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq377 107 2e-18 seq883 104 2e-17 >seq377 Length=202478 Score = 107 bits (118), Expect = 2e-18 Identities = 247/368 (67%), Gaps = 23/368 (6%) Strand=Plus/Plus Query 47221 TTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCA 47280 ||||||| ||| | ||||| || ||||| |||||| | || || || |||| ||| Sbjct 90935 TTATGCCAGGCTTGACGTTCTCGAATGAGCTCATCTCGCGTGATGAGGGTATGCATACCG 90994 Query 47281 ACTTTGCCTGTCT-CTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGTC 47339 ||||||| ||||| || | |||||| || | | ||| || |||| || Sbjct 90995 ACTTTGCTTGTCTTCTGATGCAACACC----TCAAGTATAAGCCCGAT---CCCAAACTC 91047 Query 47340 AGCGA---CATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396 | ||| ||| | |||| || || | ||| |||| ||| ||||| | || ||| || Sbjct 91048 ATCGAGGACATCATCACCGAGGCTGTTGTCATCGAGAAGGAATTTTTGACAGATGCTTTG 91107 Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456 || | || | | || |||||||| | ||||| | | || || || || || ||| Sbjct 91108 CCTGTCGCTCTGCTTGGCATGAACGCCAAACTGATGCAACAATATATTGAGTTCGTTGCC 91167 Query 47457 GACCGCCTGCTCGTTCAGCT---AAAGTATCCCAAGATTTACCACA---CCGAGAATCCA 47510 ||||| || ||| || || ||| ||||| ||| ||| || ||||||| Sbjct 91168 GACCGTCTTCTCCTTGCCCTCGGAAA------CAAGAAGTACTACAATGCCCAGAATCCT 91221 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||| |||||| ||||||| || | | ||| ||||| ||||| ||||||||||| ||| Sbjct 91222 TTCAGCTTTATGGACAACATCTCATTGGCGGGAAAGACAAACTTCTTCGAGAAGCGTGTC 91281 Query 47571 GGCGAATA 47578 || || || Sbjct 91282 GGTGATTA 91289 >seq883 Length=160511 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || |||||||||||| | || ||| || ||||||||||| || Sbjct 38370 CCACCACGAAGTCTCAACACCAAATGCAGAGTGCTCTCCTTCTGAATATTGTAGTCAGAA 38311 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || || || || ||||||||||||| ||||| || || Sbjct 38310 AGAGTGCGTCCATCTTCCAATTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGTGGA 38251 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| || ||| ||| || ||||| |||| || | ||||||| | || || Sbjct 38250 ATACCCTCTTTATCCTGGATCTTTGACTTGACGTTG-TCAATAGTGTCCGAAGATTCAAC 38192 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||| | || | || || ||||||| || || ||||| ||||||||| Sbjct 38191 TTCCAACGTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATG 38143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492032954000