Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq883 116 9e-21 seq256 95.1 3e-14 seq1350 84.2 5e-11 >seq883 Length=160511 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||||||||||||||| |||| ||| ||||| | ||| | || ||| Sbjct 38127 AGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTATAGTCGCTGAGAGTTCGACCGTCT 38068 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | || ||||| |||||||| | || || |||||||| ||||||||| || Sbjct 38067 TCTAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGCGGAATTCCTTCCTTGTCT 38008 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || |||| ||||||| || ||| || |||| ||||| ||| Sbjct 38007 TGAATCTTCGATTTTACATTGTCGATCGTGTCTGATGATTCCACTTCCAGTGTGATGGTC 37948 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| ||||| Sbjct 37947 TTGCCAGTCAAGGTCTTGACAAAGATTTG 37919 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || | || ||||| |||||| || | |||||||||| | ||| Sbjct 38364 CGAAGTCTCAACACCAAATGCAGAGTGCTCTCCTTCTGAATATTGTAGTCAGAAAGAGTG 38305 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| ||||| || || ||||| | ||||| || ||||| ||| || Sbjct 38304 CGTCCATCTTCCAATTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGTGGAATACCC 38245 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| |||||| ||| ||| || | ||||| | | ||| || |||||| Sbjct 38244 TCTTTATCCTGGATCTTTGACTTGACGTTGTCAATAGTGTCCGAAGATTCAACTTCCAAC 38185 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || ||||| || || Sbjct 38184 GTAATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTG 38147 >seq256 Length=205955 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| | || |||||||| || | ||||||||| | || ||| Sbjct 110816 CGCAGGCGCAGGACCAGGTGCAACGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTG 110757 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || ||||| ||||||||||| || || |||||||| ||| || ||| Sbjct 110756 CGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCAGGAGGGATGCCT 110697 Query 199529 TC 199530 || Sbjct 110696 TC 110695 >seq1350 Length=234104 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| |||||| ||| || || | ||||| || || ||||| |||||||||| Sbjct 96582 CCTTTTGGATGTTGTAATCACTCAGTGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGA 96523 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||| |||||||| || ||||| || || ||||| ||| ||| | Sbjct 96522 TCAAGCGCTGTTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTGGACTTGACGTTGT 96463 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| || || | | || || || | ||||| ||||| |||||||| || || || | Sbjct 96462 CGATTGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 96403 Query 199620 A 199620 | Sbjct 96402 A 96402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178899320223825