Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq73 174 3e-38 seq377 86.0 1e-11 >seq73 Length=89549 Score = 174 bits (192), Expect = 3e-38 Identities = 701/1087 (64%), Gaps = 34/1087 (3%) Strand=Plus/Minus Query 213114 ACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAG 213173 || |||||||| ||| |||| | ||| |||| || |||||||||| || | Sbjct 18086 ACATTCCACATATCATACTGAAGGATACCTTGTGAGACCGGGCTGCCCTCATAGGTCTCA 18027 Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||| || || |||||||| || ||||| ||||| ||| || || | |||||||||| Sbjct 18026 TAGGGACCTTGTTCCTTGGCGAGTTCGCATGACGCAGTCAGAGCTGCATGGTAGATGGTT 17967 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGT 213293 || || || | ||||||| | ||||||||| || ||| || | || Sbjct 17966 TCGAAAATTTGGATGTTGAGTTGACGGGCCTCTGGAGAGTCGAAAGGAAGACGCAAAGCA 17907 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGAC 213353 |||| |||| || || ||||| || || | || | |||| ||||| | ||| | Sbjct 17906 AGGAAGGCATCTGCAAGACCCTGAACACCAAGACCAACAGGTCGGTGTCGGAAGTTGCTC 17847 Query 213354 TTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTG 213413 || | || || ||||| ||||| |||||||||||||| | ||| || ||| Sbjct 17846 TTCCTGGCTTCGGGCACAGGGTAGTAGTTGATATCGATGATCTTGTTCAAGTTTCGAGTG 17787 Query 213414 GCCACTTTGGTGA---CATG-----GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGT 213465 | |||| ||| | |||| ||||| | || | ||| ||| | | | | Sbjct 17786 ACGACTTGGGTAACTTCATGAAGACGGCCA--AAGTCAT-ATT---CACCT--CGGGCTT 17735 Query 213466 CCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGT 213525 | || || || || || | ||| || ||||| || || | ||| | | | Sbjct 17734 GATCGACGAAGGTTGGAAGAGCCAGAGAGGCGAGATTGCAGACAGCGATCTCATCTGGGG 17675 Query 213526 CTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGT 213585 | ||||||| | || || |||||||| ||| || ||||| || |||||||||| | Sbjct 17674 CACTGTACTCGACAATTTCCGTGCACAGATTGGAGCTCCGGATTGTCCCCAGGTTCTTCT 17615 Query 213586 GGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCT 213645 |||| ||| |||| | ||||||||| ||||| || || | ||||||||| || Sbjct 17614 GGTTGCTCTTCTTGTTGCAGGCATCCTTGTAAAGCATATAAGGAGTCCCGGTCTCGGTCT 17555 Query 213646 GGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGAC-AGCTCCG 213704 | | | || ||| ||| | | | |||||||| ||| ||||| | ||| Sbjct 17554 GTGCTTCTAGGATCGCATACCACAACTTCTGGGCCTTGA----CCGTCTGACGACCTCGT 17499 Query 213705 GGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGT 213764 | ||| |||||||| ||||| | | |||||| | ||| |||| | || Sbjct 17498 CCCTCTTTCTCATACTGTTCATAGAGGGCATCGAATTCCTCGCCATAGACATCAGCAAGG 17439 Query 213765 CCCGG-ACAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTC-TCTGC 213821 ||||| | ||| ||||| | || ||||||| | || |||| ||| | ||| | Sbjct 17438 CCCGGTGCCTCATG-AGGACAGAACAGAGTCCAGTCTTGGTTCTTCTC-GACACGTCT-C 17382 Query 213822 ATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT 213881 ||||| || ||||| ||| || || |||| ||| | || | ||| ||| | Sbjct 17381 ATGAATAGATCCGGAGTCCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTT 17322 Query 213882 CCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAG 213941 || ||| || | ||| | || | || |||| ||||||||||| ||||||| ||| Sbjct 17321 CCGTGGTTCTTTCTCAGGTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAG 17262 Query 213942 ATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTG 213998 ||||||||||| || | || | ||||| ||||||||||| | ||| ||||| Sbjct 17261 ATGGCAAAGGCACCGGGACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTG 17202 Query 213999 AAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAG 214058 |||| || || | ||| | || || ||||| |||||||| || || ||||| || Sbjct 17201 AAGACACGAAGCATGGGAATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAA 17142 Query 214059 CCGGAGGCCCTCAGG--TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCA 214116 || | || | | | || | | ||| || || || || || ||||||||||| Sbjct 17141 CCAGTAGCACGAATGCAATGAGC--GTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCA 17084 Query 214117 TGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCA 214176 | || || | | | ||| || || || | |||||||| ||| | | || | || Sbjct 17083 TAGCACAAGTCTTGAGAGTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCA 17024 Query 214177 AGAAGCA 214183 ||||||| Sbjct 17023 AGAAGCA 17017 >seq377 Length=202478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 || |||||||| || | ||||| ||||| |||||||| ||||| || || || | ||| Sbjct 90874 TTCAGCCAGAAGATGGAGGCGAATGAGCCGGAGAAGAAAATGCCTTCGACGGCAGAGAAT 90815 Query 48272 GCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCT 48331 ||| ||| | | |||| || | ||||||||||||||| | |||||||| Sbjct 90814 GCGACGAGGCGTTGGGCGAAGCTAGACTCCTTGTCTGAGATCCACTTCAAGGCCCAGTCA 90755 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||||| |||||| || || || || ||||| Sbjct 90754 GCCTTCTTGCGGATGCAGGGGATAGTATCAATGGC 90720 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 || ||||| | ||||| | || || || || || ||||| || || || |||||||| Sbjct 90541 TGGACTTCAGCAGAGAACCGTTCGAGAAGGTTTTCGTTGACAATGCCGTCGGAAGCAGCG 90482 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAG 48607 || || |||||||| || || ||| | || |||| | ||||| ||| |||| Sbjct 90481 AAAAATGCAAGGACGTGGGAAATGAAGTATCGTTCGTCATCATTGAGACGATTGTGCCAG 90422 Query 48608 CCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | || | ||| ||| ||||||||||||||| | ||||||||||| || Sbjct 90421 TCGTGAAGGTCCTTGGACAGGTCCACTTCTTCAGCTGTCCAGAAGGATGC 90372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931515624864000