Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq994 140 2e-27 seq883 111 1e-18 >seq994 Length=146303 Score = 140 bits (154), Expect = 2e-27 Identities = 328/493 (67%), Gaps = 4/493 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || |||||||| ||||| || || |||| || || || | || | ||||| || Sbjct 81029 GAGATCATTGCCAACGACCAGGGCAACCGAACCACTCCCTCCTTCGTCGCCTTTACCGAC 81088 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| ||||| || | || || | |||| ||| || || || || Sbjct 81089 ACCGAGCGTCTCATTGGTGACTCCGCGAAGAACCAAGTTGCCATGAACCCCCAGAACACC 81148 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | ||||| || || | ||||| || || || || ||||| | || || ||||| Sbjct 81149 GTCTTTGACGCCAAGCGCTTGATCGGCCGGAAGTTCAATGATCCTGAAGTTCAGGCTGAT 81208 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| | | ||||| || || | |||| | Sbjct 81209 ATGAAACACTTCCCATTCAAGGTTGTCGACAAGGGTGGCAAGCCCGTCGTTGAAGTGGAG 81268 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || | |||||||| | || ||| |||| || || ||||| || ||| Sbjct 81269 TTCAAG--GGCGAGATAAAACAATTCACTCCCGAAGAAATCTCATCCATGGTGTTGACCA 81326 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTG 474749 | |||| | ||||||| || ||||||||| || | | || || || |||| Sbjct 81327 AGATGAGAGAAACCGCTGAATCGTATCTTGGAGGTACGGTCAACAACGCTGTCATCACTG 81386 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || ||||| || || || ||||| |||||||| || || ||||| || ||||| | Sbjct 81387 TCCCTGCATACTTCAACGACTCTCAGCGTCAAGCCACCAAGGATGCCGGTCTCATTGCCG 81446 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 |||| ||||| | ||||| || || ||||| || || || || |||| || ||||||| Sbjct 81447 GTCTCAATGTCCTCCGTATCATCAACGAACCCACCGCGGCTGCCATTGCCTACGGTCTTG 81506 Query 474870 ATAAGAATTCTGA 474882 ||||||| |||| Sbjct 81507 ATAAGAAGGCTGA 81519 >seq883 Length=160511 Score = 111 bits (122), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || || ||||| || |||||| | || || ||| ||||| Sbjct 37909 ACGGAGACGAAGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTGAGAGT 37850 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| |||||||| || |||||||| ||||||||||| || |||||||| || Sbjct 37849 GCGGCCGTCTTCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGAATACC 37790 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| || ||||| || ||| || || ||||| || ||||| Sbjct 37789 TTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAG 37730 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| |||||||| ||||| ||||| Sbjct 37729 AGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTG 37691 Score = 87.8 bits (96), Expect = 1e-11 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || || | ||| | ||| |||||| || || |||||| | || Sbjct 37681 ACGGAGGCGAAGGACCAAATGCAAGGTAGATTCTTTCTGAATGTTGTAATCACTCAAGGT 37622 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || || || || || ||||| ||||||||||||||||||||||| || Sbjct 37621 GCGGCCATCCTCGAGCTGTTTGCCGGCGAAAATGAGACGTTGTTGATCAGGAGGAATGCC 37562 Query 480671 TTCCTTGTCTTGAATCTT 480688 ||||||||| |||||||| Sbjct 37561 TTCCTTGTCCTGAATCTT 37544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268115930093300