Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq73 109 8e-18 seq377 100 4e-15 >seq73 Length=89549 Score = 109 bits (120), Expect = 8e-18 Identities = 256/388 (66%), Gaps = 15/388 (4%) Strand=Plus/Plus Query 259795 CGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGT 259854 |||| | || || | |||||||||||||| || ||||| |||| || || | Sbjct 16857 CGAGAGACCGCAACACATGCTCATGCGTGTGGCAGTTGGCATCCATGGAGATG---ACAT 16913 Query 259855 CGACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCAC 259914 ||| || ||| | ||| |||||| | |||||| ||| ||| ||||| Sbjct 16914 CGAGAAGGCGATAGAG------------ACCTACAACCTCATGTCCCAGAAGTGCTTCAC 16961 Query 259915 CTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTT 259974 | || | || || || || ||||||||||| |||| || || || || ||||| Sbjct 16962 CCACGCCTCTCCAACTCTGTTCAATGCCGGCACTCCGCAACCTCAATTGTCCTCATGCTT 17021 Query 259975 TCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGC 260034 || | |||||||| | || || ||||| || || ||||| |||||| || || Sbjct 17022 CTTGGTCGACATGAAAGAGGACAGCATTGAGGGAATTTACGACACTCTCAAGACTTGTGC 17081 Query 260035 GCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGG 260094 | ||||||||| | || ||||| || || | ||| || | || || | || Sbjct 17082 TATGATCTCCAAGACTGCTGGCGGTATTGGCCTCAACGCTCATTGCATTCGTGCTACTGG 17141 Query 260095 CGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTT 260154 |||| | || || ||||||||| ||||| || || | ||||||||||| || || Sbjct 17142 TTCCTATATTGCCGGGACCAACGGCACTTCCAATGGTCTCATTCCCATGCTTCGTGTCTT 17201 Query 260155 TAACGACACGGCGCGCTACGTCGACCAG 260182 ||| |||| || || || || |||||| Sbjct 17202 CAACAACACTGCCCGTTATGTGGACCAG 17229 >seq377 Length=202478 Score = 100 bits (110), Expect = 4e-15 Identities = 179/258 (69%), Gaps = 9/258 (3%) Strand=Plus/Plus Query 1456000 TTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTAC 1456059 |||||| || ||||||||||| ||||| || | ||| | || |||||||||||| Sbjct 90624 TTCCAGGTCATGATCGAAAACATTCACTCAGAGATGTACAGCTTGCTCATCGACACCTAC 90683 Query 1456060 GTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTG 1456119 |||| || || | ||| | | |||||| |||||| || || | || | | Sbjct 90684 ATCAAAGATCCCAAACAAAAGTCCTATCTCTTTGACGCCATTGATACTATCCCCTGCATC 90743 Query 1456120 AGGAAAAAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTG 1456176 | || ||||| |||||||| ||||||||||| |||||||| || | ||| | Sbjct 90744 CGCAAGAAGGCTGACTGGGCCTTGAAGTGGATCTCAGACAAGGAG----TCTA-GCTTCG 90798 Query 1456177 CCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG 1456235 || | || ||||||| || | | |||||| ||||| || ||||| ||| ||| | Sbjct 90799 CCCAACGCCTCGTCGCATTCTCTGCCGTCGAAGGCATTTTCTTCTCCGGCTCATTCGCCT 90858 Query 1456236 CCATCTTTTGGCTCAAGA 1456253 ||||||| ||||| |||| Sbjct 90859 CCATCTTCTGGCTGAAGA 90876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177668933538950