Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq73 255 7e-63 >seq73 Length=89549 Score = 255 bits (282), Expect = 7e-63 Identities = 901/1390 (65%), Gaps = 37/1390 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | |||||||| || |||||||| || || ||||||||||| | |||||| Sbjct 18243 GTAGATGTTGGACGTGTATGGCTCGAAGCATTCGTTGTTGCCCAAGATTTGAGAGGTGGA 18184 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGAT----GC 110822 || || ||||| || || | | ||| ||| |||| ||| | | || || Sbjct 18183 TGCAGTAGGCATAGGGGCAACAAGGAGAGAGTTGCGAACACCATGTTTAGCAATCTCAGC 18124 Query 110823 GTTCCTTGAGAACATCCCAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATGTCAAA 110880 ||| || ||||||| || | | || || || | || |||| |||| ||| | Sbjct 18123 TTTCAATG----CATCCCAATCCCA-TAGATCTGAAGGAGTAACATTCC-ACATATCATA 18070 Query 110881 CTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTC 110940 |||||| | ||||| || | || |||||| |||| ||||||| |||||| | | Sbjct 18069 CTGAAGGATACCTTGTGAGACCGGGCTGCCCTCATAGGTCTCATAGGGACCTTGTTCCTT 18010 Query 110941 AGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || | ||| || ||| ||| | ||| || || |||||||| || || | || Sbjct 18009 GGCGAGTTCGCATGACGCAGTCAGAGCTGCATGGTAGATGGTTTCGAAAATTTGGATGTT 17950 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGA 111059 | | ||| || || || || | | || ||| | || || |||| || | Sbjct 17949 GAGTTGACGGGCCTCTGGAGAGTCGAAAG-GAAGACGCAAAGCAAGGAAGGCATCTGCAA 17891 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 |||| |||||||| | ||||| ||||| |||||| | || ||| | || | Sbjct 17890 GACCCTGAACACCAAGACCAACAGGTCGGTGTCGGAAGTTGCTCTTCCTGGCTTCGGGCA 17831 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | || || | || | || |||| ||| | ||| || || | | || | || Sbjct 17830 CAGGGTAGTAGTTGATATCGATGATCTTGTTCAAGTTTCGAGTGACGACTTGGGTAACTT 17771 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCT--CTTCATTGACATACTTTGGAAGGGC 111237 ||||||| || | ||| | | | || ||| || ||| | ||||||| || Sbjct 17770 CATGAAGACGGCCAAAGTCATA--TTCACCTCGGGCTTGATCGACGAAGGTTGGAAGAGC 17713 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 | || || | |||||| ||||| ||||||| | ||||||| | |||||| || Sbjct 17712 CAGAGAGGCGAGATTGCAGACAGCGATCTCATCTGGGGCACTGTACTCGACAATTTCCGT 17653 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 || | ||||| ||| || ||||||| ||||| ||||| |||||||||||||| || Sbjct 17652 GCACAGATTGGAGCTCCGGATTGTCCCCAGGTTCTTCTGGTTGCTCTTCTTGTTGCAGGC 17593 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 ||||||||| ||||| || || ||||| ||||| ||||||| || || || || | ||| Sbjct 17592 ATCCTTGTAAAGCATATAAGGAGTCCCGGTCTCGGTCTGTGCTTCTAGGATCGCATACCA 17533 Query 111418 -AACATCGGCGGCTGGTAC-AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 111475 ||| || | | || | | || || | |||||||| ||| |||| | ||| Sbjct 17532 CAACTTCTGGGCCTTGACCGTCTGACG--ACCTCGTCCCTCTTTCTCATACTGTTCATAG 17475 Query 111476 AGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAA 111535 ||||| || || ||||| || | || | || || ||||||| | |||||||| Sbjct 17474 AGGGCATCGAATTCCTCGCCATAGACATCAGCAAGGCCCGGTGCCTCATGAGGACAGAAC 17415 Query 111536 AGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 111593 |||| ||| | | ||| ||| || || ||||||| || || ||| |||| || | Sbjct 17414 AGAGTCCA--GTCTTGGTTCTTCTCGACACGTCTCATGAATAGATCCGGAGTCCAAAGTG 17357 Query 111594 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 111653 |||| | || | ||| ||||||| | || ||||| || | | || Sbjct 17356 CATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCGTGGTTCTTTCTCAGGTTCAGCC 17297 Query 111654 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 111712 | || | || |||||||||||||||||| ||||||| || | | || ||||| Sbjct 17296 AATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATGGCAAAGGCACC---GGGACGCT 17240 Query 111713 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 ||| | || | ||||| || || ||| ||| || || |||||||| ||||| | Sbjct 17239 TATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAGACACGAAGCATGGGAATGA 17180 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 111827 ||||| || || || ||||| |||| || | | || | | ||| Sbjct 17179 GACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCAGTAGCACGAATGCAATGAG 17120 Query 111828 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 111887 || | |||||||| ||||| ||| ||||| ||||| | | ||||| | | Sbjct 17119 CGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCATAGCACAAGTCTTGAGAGTGTCGT 17060 Query 111888 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 111947 | || || | || |||||| || || ||| | |||||| ||||| || ||| Sbjct 17059 AAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAAGCATGAGGACAATTGAGGTT 17000 Query 111948 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTGGGACATC 112006 || || || |||||||| || ||||| | ||||| |||| || | |||||||| Sbjct 16999 GCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGTGAAGCACTTC-TGGGACATG 16941 Query 112007 TTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGC 112066 || ||| ||||| | | || ||||| || || |||||||| | ||| || ||| Sbjct 16940 AGGTTGTAGGTCTCTATCGCCTTCTCGATGTCATCTCCATGGATGCCAACTGCCACACGC 16881 Query 112067 ATGAACATGT 112076 |||| ||||| Sbjct 16880 ATGAGCATGT 16871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628020420660000