Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq883 203 4e-47 seq73 178 1e-39 seq738 138 1e-27 >seq883 Length=160511 Score = 203 bits (224), Expect = 4e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||| | Sbjct 37688 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 37747 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| ||||| | || || ||||||||||| || |||||||| ||||| Sbjct 37748 GATACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAAGGTATTCCTCCCGACCAA 37807 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||| || ||||||||||| || | || || || ||||| || Sbjct 37808 CAACGTCTCATTTTTGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCAGTGACTACAAC 37867 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| ||||| |||||||| || ||| | ||||| || ||||| Sbjct 37868 ATCCAAAAAGAATCGACTCTTCACCTGGTCCTTCGTCTCCGTGGTGG 37914 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || |||||||| || || || || || || ||| Sbjct 37916 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACCATCACACTGGAAGTGGAATCATCA 37975 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || | || ||||| |||||||| |||||||| || ||||| Sbjct 37976 GACACGATCGACAATGTAAAATCGAAGATTCAAGACAAGGAAGGAATTCCGCCGGACCAA 38035 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || || | || || ||||| || ||| | || || | ||| || || ||| |||||||| Sbjct 38036 CAACGATTGATCTTCGCTGGAAAACAATTAGAAGACGGTCGAACTCTCAGC-GACTATAA 38094 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| ||||| ||| | || | || ||||| Sbjct 38095 CATCCAGAAGGAGTCGACTCTCCATCTCGTCCTCCGATTGCGAGGTGG 38142 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||| ||||||||||| | || ||||| || Sbjct 38144 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACTATTACGTTGGAAGTTGAATCTTCG 38203 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| | || || ||||| || ||||| ||||| || || || Sbjct 38204 GACACTATTGACAACGTCAAGTCAAAGATCCAGGATAAAGAGGGTATTCCACCGGATCAA 38263 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || |||||| | || |||| || || || | ||||| ||| Sbjct 38264 CAGCGATTGATCTTTGCAGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAT 38323 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| |||||| ||| | || ||| | ||||| ||||| || Sbjct 38324 ATTCAGAAGGAGAGCACTCTGCATTTGGTGTTGAGACTTCGTGGTGGTCA 38373 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| | |||| ||| | ||| | ||| | Sbjct 37484 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAATGTAAAGTCC 37543 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||||||||| || |||||||| || || || ||||| ||||| || || || Sbjct 37544 AAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAA 37603 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| || ||| | || || || | || || ||||| || | ||| Sbjct 37604 CAGCTCGAGGATGGCCGCACCTTGAGTGATTACAACATTCAGAAAGAATCTACCTTGCAT 37663 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | ||| | || || || ||||| Sbjct 37664 TTGGTCCTTCGCCTCCGTGGTGG 37686 >seq73 Length=89549 Score = 178 bits (196), Expect = 1e-39 Identities = 648/1003 (65%), Gaps = 45/1003 (4%) Strand=Plus/Minus Query 80781 GGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAAC 80840 ||| || || | ||||| |||| ||||||||| ||||| ||| || || || || Sbjct 17841 GGCTTCGGGCACAGGGTAGTAGTTGATATCGATGATCTTGTTCAAGTTTCGAGTGACGAC 17782 Query 80841 CCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT---------TC-ACAA 80890 | ||||| |||||||| |||||| ||| | ||| || || | Sbjct 17781 TTGGGTAACTTCATGAAGACGGCCAAAGTCATATT----CACCTCGGGCTTGATCGACGA 17726 Query 80891 ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAA 80947 | | ||||| ||| || || |||||||| || || | ||| || | || ||||| Sbjct 17725 AGGTTGGAAGAGCCAGAGAGGCGAGATTGCAGACAGCGATCTCATCTGGGGCA-CTGTA- 17668 Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||||| ||||||||||||| ||| || | ||||| |||||||| |||||||| Sbjct 17667 -CTCGACAATTTCCGTGCACAGATTGGAGCTCCGGATTGTCCCCAGGTTCTTCTGGTTGC 17609 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || |||||||| ||| || || || ||||||||| ||||| | Sbjct 17608 TCTTCTTGTTGCAGGCATCCTTGTAAAGCATATAAGGAGTCCCGGTCTCGGTCTGTGCTT 17549 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCA 81127 ||||| || | ||| | || | ||||||||| || || | || || | Sbjct 17548 CTAGGATCGCATACCACAACTTCTGGGCCTTGACCGTCTGACGACCTCGTCCCTCTTTCT 17489 Query 81128 CATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACT 81187 |||||| | || | ||||| | | || | | |||| ||| | || || Sbjct 17488 CATACTGTTCATAGAGGGCATCGAATTCCTCGCCATAGACATCAGCAAGGCCCGGTGCCT 17429 Query 81188 CGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAG 81247 | | ||| || | ||| |||||| || ||||| ||| ||||||| || | Sbjct 17428 CATGAGGACAGAACAGAGTCCAGTCTTGGTTCTTCTCGACACGTCTCATGAATAGATCCG 17369 Query 81248 GGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 | |||| || || |||| ||| ||| ||| |||| || | || ||||| | Sbjct 17368 GAGTCCAAAGTGCATAAAACAAGTCACGGGCGCGAACCTCTTCCTTTCCGTGGTTCTTTC 17309 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACC 81367 || | || | || | || ||||| ||||||||||||||||| | ||| | | | Sbjct 17308 TCAGGTTCAGCCAATCGAAGACATCCGCGTGCCATGGCTCCAGATAGATGGCAAAGGCAC 17249 Query 81368 CCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCA 81421 | | |||| ||||||||||| || ||||||||||| ||| || ||||| | Sbjct 17248 C---GGGACGCTTATTGCCACCCTGGTCCACATAACGGGCAGTGTTGTTGAAGACACGAA 17192 Query 81422 ACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481 ||| || |||| ||||| || ||||| || || | ||| || || | || | Sbjct 17191 GCATGGGAATGAGACCATTGGAAGTGCCGTTGGTCCCGGCAATATAGGAACCAGTAGCAC 17132 Query 81482 GCACCTTGC--TGA---TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536 | | ||| ||| ||| || || || || || | ||| || ||| |||||| Sbjct 17131 GAA---TGCAATGAGCGTTG--AGGCCAATACCGCCAGCAGTCTTGGAGATCATAGCACA 17077 Query 81537 CCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACA 81596 || | || || ||||||||||| ||||| || | ||||||||| | |||||| || Sbjct 17076 AGTCTTGAGAGTGTCGTAAATTCCCTCAATGCTGTCCTCTTTCATGTCGACCAAGAAGCA 17017 Query 81597 GCTTGACATCTGAGGGCTTTTTGA--GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 |||| ||||| || || ||||||||||||||| ||||| | ||||| || Sbjct 17016 TGAGGACAATTGAGG--TTGCGGAGTGCCGGCATTGAACAGAGTTGGAGAGGCGTGGGTG 16959 Query 81655 AAATAACGGTTTGACATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTG 81713 || | | ||||| |||| ||||| || | | | | | || || || || || Sbjct 16958 AAGCACTTCTGGGACATGAGGTTGTAGGTCTCTATCGCCTTCTCG-ATGTCATCTCCATG 16900 Query 81714 AATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 || || | || |||||||| | ||||| || || ||||| Sbjct 16899 GATGCCAACTGCCACACGCATGAGCATGTGTTGCGGTCTCTCG 16857 >seq738 Length=55810 Score = 138 bits (152), Expect = 1e-27 Identities = 287/422 (68%), Gaps = 8/422 (2%) Strand=Plus/Minus Query 31993 AAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATG 32052 |||||| ||||| ||||| || | ||| ||| |||| ||| || || || ||| Sbjct 19856 AAGCCTGGTCAGCGAAAGGTTATGTTCGCTTGCTTCAAACGAAACTTGAAGAAAGATATG 19797 Query 32053 AAGGTGGCGCAGCT-GTCGGGCTACGTGGCAGAGCAA--ACGGCCTATCACCACGGCGAG 32109 || || || | || | ||| || || | | | || ||||| ||||| ||||||||| Sbjct 19796 AAAGTCGCCGAACTCGCCGGTCT---TGTCGGTGGAATGACGGCTTATCATCACGGCGAG 19740 Query 32110 GCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTG 32169 |||||||||||| ||||| || || ||||| || |||||||| | || || | Sbjct 19739 GCGTCGCTCCAGCAGACCATCGTTGGTCTGGCTCAAAATTTTGTCGGATCCAACAATGTC 19680 Query 32170 AACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCG 32229 ||||| ||||||||||| || ||||| || || || || || | || |||| Sbjct 19679 AACTTGCTCGAGCCATCCGGCCAGTTCGGCACGCGAAATCAAGGAGGTAGCGACTCTGCT 19620 Query 32230 AGCTCCCGTTACATCTTCACCCGTCTCGC-ACCTTCGACGCGCAAGATTTTCGACCCGTC 32288 ||| | || || || ||||||||||| | |||||| | || ||| | ||| ||| | | Sbjct 19619 AGCGCTCGATATATTTTCACCCGTCTGTCTCCCTTCG-CCCGGAAGCTCTTCCACCAGGC 19561 Query 32289 GGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTA 32348 || || | | | | ||||| |||||||| || | |||| |||| ||| || Sbjct 19560 TGATGAACCTCTCTTGACTTACAACACTGATGACGACAAGAAGATCGAACCGGAGTTATA 19501 Query 32349 CAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGGGTTCAG 32408 || || |||| ||||| |||| || ||||| || || |||||||| || | || Sbjct 19500 TGTGCCAGTCGTTCCCATGATTCTGGTCAATGGTGCCGACGGTATCGGAACAGGCTGGAG 19441 Query 32409 TT 32410 || Sbjct 19440 TT 19439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570299884902000