Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq883 109 4e-19 >seq883 Length=160511 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || || || | |||||||| || || Sbjct 38144 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACTATTACGTTGGAAGTTGAATCTTCG 38203 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | | || ||| || || ||||| ||| | || || |||||| Sbjct 38204 GACACTATTGACAACGTCAAGTCAAAGATCCAGGATAAAGAGGGTATTCCACCGGATCAA 38263 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| ||||| ||| ||||||| | ||||||| | || ||||| Sbjct 38264 CAGCGATTGATCTTTGCAGGCAAGCAATTGGAAGATGGACGCACTCTTTCTGACTACAAT 38323 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || || ||| ||| | ||||| || || || Sbjct 38324 ATTCAGAAGGAGAGCACTCTGCATTTGGTGTTGAG 38358 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || || || || || || |||||||| || || || |||| Sbjct 37688 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 37747 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| |||||| | || || || || Sbjct 37748 GATACCATCGACAATGTGAAGTCCAAGA-TCCAGGACAAGGAAGGTATTCCTCCCGACCA 37806 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || ||||||||||| ||||| ||||||| |||||| | | || ||||| Sbjct 37807 ACAACGTCTCATTTTTGCCGGCAAGCAACTCGAAGACGGCCGCACTCTCAGTGACTACAA 37866 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| || || Sbjct 37867 CATCCAAAAAGAATCGAC 37884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || ||||| ||||| || || |||| || || | || | |||| Sbjct 37484 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAATGTAAAGTCC 37543 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| ||||| ||||| | || || |||||||| ||| | || || ||||||||| Sbjct 37544 AAGATTCAGGACAAGGAAGGCATTCCTCCTGATCAACAACGTCTCATTTTCGCCGGCAAA 37603 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 || || || || | ||||| || | ||||||||||| || ||||| || || || ||| Sbjct 37604 CAGCTCGAGGATGGCCGCACCTTGAGTGATTACAACATTCAGAAAGAATCTACCTTGCAT 37663 Query 23815 TTAGT 23819 || || Sbjct 37664 TTGGT 37668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338003523749300