Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq883 158 3e-33 seq1077 109 1e-18 seq1350 102 2e-16 seq256 95.1 3e-14 seq885 89.7 1e-12 >seq883 Length=160511 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || |||||||| || || || |||| || || ||| | ||||| || ||| Sbjct 38127 AGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTATAGTCGCTGAGAGTTCGACCGTCT 38068 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||||||| |||||||| |||||||||||| Sbjct 38067 TCTAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGCGGAATTCCTTCCTTGTCT 38008 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || ||| ||||| |||||||| | |||||| || | ||||| ||| Sbjct 38007 TGAATCTTCGATTTTACATTGTCGATCGTGTCTGATGATTCCACTTCCAGTGTGATGGTC 37948 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | || | |||||| Sbjct 37947 TTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 37916 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||||||||||| ||||| || | ||| | || ||| Sbjct 37899 AGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTGAGAGTGCGGCCGTCT 37840 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || || || || |||||||||||||| ||||||||||||||||| Sbjct 37839 TCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCC 37780 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || || || || || | ||||| ||| Sbjct 37779 TGGATCTTGGACTTCACATTGTCGATGGTATCGCTGGACTCGACCTCAAGAGTGATGGTC 37720 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 37719 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 37688 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | || |||||| || || || | |||||| || | | ||| Sbjct 38365 ACGAAGTCTCAACACCAAATGCAGAGTGCTCTCCTTCTGAATATTGTAGTCAGAAAGAGT 38306 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | ||||| || || ||||| | ||| ||||| || || |||||||| Sbjct 38305 GCGTCCATCTTCCAATTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGTGGAATACC 38246 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || || || ||||||||| ||| || || || ||||| || | ||| || || || Sbjct 38245 CTCTTTATCCTGGATCTTTGACTTGACGTTGTCAATAGTGTCCGAAGATTCAACTTCCAA 38186 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||| || ||||| || ||||| || || Sbjct 38185 CGTAATAGTCTTTCCGGTCAAGGTCTT 38159 Score = 109 bits (120), Expect = 1e-18 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | |||||||| ||| || | ||||| || ||||| || || Sbjct 37656 GTAGATTCTTTCTGAATGTTGTAATCACTCAAGGTGCGGCCATCCTCGAGCTGTTTGCCG 37597 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || || |||||||| || || ||||| ||||||||||| || ||||| ||| Sbjct 37596 GCGAAAATGAGACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTT 37537 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCA 225691 ||| |||||||| || || || || || | ||||| |||||||| |||| Sbjct 37536 ACATTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 37482 >seq1077 Length=9637 Score = 109 bits (120), Expect = 1e-18 Identities = 194/280 (69%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||| ||||| |||| || || ||| | ||||||| ||| ||| | || Sbjct 5202 ACTTTATACTTAATGTTTGCATTATTCTCAGGTTTATTAGGTACAGCATTCTCTGTACTT 5143 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTTTA 7559 ||||| ||||| ||| | | || ||| |||| |||||| || |||| ||| | || Sbjct 5142 ATAAGATTAGAGTTATCAGGACCTGGTGTTCAATATATTGC-TGATAAT---CAATTATA 5087 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| ||||| || || ||| | | ||||||||||| | |||||||| | | | Sbjct 5086 TAATAGTATAATTACAGCTCACGCCATAATGATGATTTTCTTCATGGTTATGCCTGGTTT 5027 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || | |||||||| |||| || | || ||| | | || | ||| |||||||| || Sbjct 5026 ACTAAGTGGTTTCGGTAATTTCTTATTACCATTATTAGTAGGGGGTCCAGATATGGCATT 4967 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || || || || || ||||| |||||| || |||| Sbjct 4966 CCCTAGACTAAATAACATTAGTTTCTGATTATTAGTGCCT 4927 >seq1350 Length=234104 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||||| || |||| ||||| || || ||||| || |||||||| Sbjct 96580 TTTTGGATGTTGTAATCACTCAGTGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 96521 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || |||||||| || || || |||||||| ||||||||||| ||| || ||| Sbjct 96520 AAGCGCTGTTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCG 96461 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || || | || || || | ||||| ||||||||||| Sbjct 96460 ATTGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 96417 >seq256 Length=205955 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| | || || || || || | ||||| |||| || ||| Sbjct 110816 CGCAGGCGCAGGACCAGGTGCAACGTTGACTCCTTCTGAATGTTGTAGTCGGACAGAGTG 110757 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| || |||||||| || ||||| ||||| || || || ||| Sbjct 110756 CGGCCATCTTCAAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCAGGAGGGATGCCT 110697 Query 225613 TCCTTGTCT-TGGA 225625 ||||||||| |||| Sbjct 110696 TCCTTGTCTGTGGA 110683 >seq885 Length=30348 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 |||| ||||||||| | || |||||| ||||||||| ||||| ||||||||||| Sbjct 10887 AATGCTAATTTATGAAGTCTTATACCAGGACTTCTCATATTTAATATTGTAGTAATAAAA 10946 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| || || | | | |||||||| ||| |||| | |||||| |||||||| Sbjct 10947 TTCATAGCTCCGAGCAAACTACTTATACCTGAAAGGTGTAGAGCAAATATGGCTAAATCT 11006 Query 371485 AC 371486 || Sbjct 11007 AC 11008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192508663023650