Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhinocladiella_20mackenziei_20[genbank_20GCA_5F001723235.1_202016- 09-12] 1,475 sequences; 33,409,556 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq883 120 7e-22 seq1350 95.1 3e-14 seq256 86.0 1e-11 >seq883 Length=160511 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || |||||| ||||| ||||| ||||| || |||||||| || ||| | ||||| || Sbjct 38131 TCGGAGGACGAGATGGAGAGTCGACTCCTTCTGGATGTTATAGTCGCTGAGAGTTCGACC 38072 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| ||| || |||||||| | | || ||||||| || ||||||||||| Sbjct 38071 GTCTTCTAATTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGCGGAATTCCTTCCTT 38012 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||| || ||| ||| | || | ||||||| || ||||| || || || Sbjct 38011 GTCTTGAATCTTCGATTTTACATTGTCGATCGTGTCTGATGATTCCACTTCCAGTGTGAT 37952 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| || |||| ||||| Sbjct 37951 GGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 37916 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || |||||||| || ||||||||||||||||| || | ||| | || ||| Sbjct 37899 AGGACCAGGTGAAGAGTCGATTCTTTTTGGATGTTGTAGTCACTGAGAGTGCGGCCGTCT 37840 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || || | || ||||| | | || |||||||| || Sbjct 37839 TCGAGTTGCTTGCCGGCAAAAATGAGACGTTGTTGGTCGGGAGGAATACCTTCCTTGTCC 37780 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || || || || ||| | || | | | | ||| | ||| || |||||||| || | Sbjct 37779 TGGATCTTGGACTTCACATTGTCGATGGTATCGCTGGA--CTCGACCTCAAGAGTGATGG 37722 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || |||||||| ||||||| ||||| Sbjct 37721 TCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 37688 >seq1350 Length=234104 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 ||||||||||||||||| | |||| ||||| || || || ||||||||||| Sbjct 96580 TTTTGGATGTTGTAATCACTCAGTGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATC 96521 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||| ||||||| | ||| |||||||| ||||| || || ||||| | || Sbjct 96520 AAGCGCTGTTGGTCCGGGGGGATGCCTTCCTTATCTTGGATCTTGGACTTGACGTTGTCG 96461 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | || || ||| || ||||| || || || ||||||||||| ||||| |||||| Sbjct 96460 ATTGTATCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 96401 >seq256 Length=205955 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| |||||| | || | | |||| ||| ||| || || ||||| |||| Sbjct 110630 CTTGAATTTTGGTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGAGTGATAG 110571 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||||||||| ||||||||||||| |||||| || Sbjct 110570 TCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGTT 110534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153798994589725