Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq172 114 3e-20
>seq172
Length=386049
Score = 114 bits (126), Expect = 3e-20
Identities = 305/462 (66%), Gaps = 8/462 (2%)
Strand=Plus/Minus
Query 230180 AGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCA 230239
|||||||||| |||| | |||||| ||||| | || ||||| ||| | | |
Sbjct 25338 AGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTA 25279
Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299
| || ||| || ||| ||| ||||||| || || | || |||||| |||||
Sbjct 25278 TATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCT 25219
Query 230300 GTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAAC 230358
|| ||||| |||||||| || | | || | | || ||| || | | ||||
Sbjct 25218 CCCGTGACGAAGGTCTCCA-CACCGACTTTGCCTGCCTCTTGTTCTCCCACTT---GAAC 25163
Query 230359 AAGCTACCATTCGAGA---CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAG 230415
| | ||| | || | ||| || | | ||||| || || ||||| | ||| |
Sbjct 25162 CATCGTCCAAGCAAGCAAGCAGTCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAA 25103
Query 230416 GAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGA 230475
|||||| | ||| ||| |||| ||| ||| | ||||||||||||| | |||
Sbjct 25102 GAGTTCTTGACTGATGCTCTTCCCTGTGCTCTTCTCGGCATGAACGCTGCTTTGATGAAG 25043
Query 230476 CAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTAC 230535
|| ||||| || ||||| || || || | | | || || ||| ||||||| |||
Sbjct 25042 CAATACATTGAGTTCGTCGCTGATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTAC 24983
Query 230536 AACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTC 230595
|| || ||||| || | || |||||| ||| || ||| || ||||||||||||
Sbjct 24982 AAGTCCGCCAACCCATTCGACTTCATGGAGAACATCTCCCTTGCCGGAAAGACCAACTTC 24923
Query 230596 TTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||||| ||||||||| ||||| || | ||||||| |||
Sbjct 24922 TTCGAGAAGCGTGTCGCCGACTACCAAAAAGCTGGTGTTATG 24881
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057817114888040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |