Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq487 172 7e-38 seq172 87.8 2e-12 >seq487 Length=114140 Score = 172 bits (190), Expect = 7e-38 Identities = 1186/1889 (63%), Gaps = 57/1889 (3%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| || || |||||||| || | ||| | | ||||| || Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || || || | || ||||| | ||| || |||| ||| ||||| | |||| | Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121 Query 53048 TTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTC 53104 || | ||| || || || || ||||| | || || | ||||| || | ||| | Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061 Query 53105 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 53164 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001 Query 53165 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 53224 | || || | || | ||| ||||| || || || || | | |||| || || Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941 Query 53225 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 53284 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881 Query 53285 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 53342 | || | |||||| | || | |||| |||| | ||||||||| | ||| ||| Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 16823 Query 53343 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 53398 ||| || || || | |||| || ||| | ||||| ||| Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 16767 Query 53399 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 53457 || | || | || || || || || ||| | || || ||| ||| || ||||| Sbjct 16766 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 16708 Query 53458 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 53517 |||||||||| | || || | || || || | || ||||| | ||||| Sbjct 16707 CTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAG 16649 Query 53518 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 53576 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 16648 CTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 16590 Query 53577 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTG 53635 || | || || |||| ||| || || || || || || || || || | ||| | Sbjct 16589 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 16530 Query 53636 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATT------ 53689 || | || | | ||||| | || || |||| || | ||||| || Sbjct 16529 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 16470 Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 || | | | |||| ||| |||| |||||||| || ||||| | || | | || Sbjct 16469 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 16411 Query 53750 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 |||| | ||||| ||||| ||||| | |||||| || | || | ||||| Sbjct 16410 GTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 16351 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 |||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 16350 ACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 16291 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTC 53925 || | || | | ||| | | |||| | || | ||| | ||| ||| Sbjct 16290 CTCGAGGATGGAGTACCAAAGCTTCTGGGCCT---TGATGGTCTTGCGACCCTTGCCTTC 16234 Query 53926 TCTTTCGTA--TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 | ||||| | ||| | | | ||||| ||||| || |||||| | | || Sbjct 16233 TGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCG 16176 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 54040 || || || | || ||||||| | ||| | | | ||| |||| || || ||||| Sbjct 16175 GGGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATG 16119 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 16118 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 16059 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || Sbjct 16058 TGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 15999 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | ||||| || || ||||| ||||| || | ||||| || ||||| || || Sbjct 15998 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 15939 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 |||| | ||| |||| |||||| ||||| || || || || | || || |||| Sbjct 15938 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 15879 Query 54281 CTGGCACGAATATT----ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 ||||||| || | || ||| ||||| || || || || | || ||||| | Sbjct 15878 GTGGCACGGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCAT 15823 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 || || || | ||||| || || || || ||||| || ||| |||||| | | Sbjct 15822 GGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAA 15763 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 || || ||| | ||| | || || || ||| | ||| ||||| ||||| Sbjct 15762 GAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTG 15703 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTG 54516 ||||| | || || | | |||||| ||||||||||| || ||||| Sbjct 15702 TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCC 15643 Query 54517 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 54576 ||||| || || || || | ||| | |||||| || || | ||| | |||||| | Sbjct 15642 GTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTC 15583 Query 54577 TATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 54634 | || | ||| ||| | || | ||| || || ||||| || | ||| ||||| Sbjct 15582 GAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA-- 15525 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || || || || | ||| | |||||||| Sbjct 15524 TCCCGATCATAGACAATGGCAGAGTTGAG 15496 >seq172 Length=386049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 219/332 (66%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 ||||| |||||||| || |||||| | || | || |||| ||||| || || Sbjct 25460 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 25519 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | ||| || | || || || ||||| || || ||||| || |||||||| || Sbjct 25520 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 25579 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | |||||| | | ||| || ||| | ||||| || | || || || || ||| Sbjct 25580 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATT 25639 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 |||||| || || || || || | || || | ||| ||| | || || | Sbjct 25640 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 25699 Query 24597 AGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 24653 ||| || ||||| || | || ||| || || | ||| | |||||| | ||||| ||| Sbjct 25700 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 25759 Query 24654 GATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 || ||||||||||| || ||||| | |||||| Sbjct 25760 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 25791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593717829867840