Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq172 167 2e-36
seq116 116 4e-21
seq344 114 1e-20
seq359 91.5 2e-13
>seq172
Length=386049
Score = 167 bits (184), Expect = 2e-36
Identities = 552/858 (64%), Gaps = 73/858 (9%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||| ||||| || |||||||||| ||| || | || |||
Sbjct 25791 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 25732
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751
|||||||| | | | ||||||| | | | || ||| | ||| | | || ||
Sbjct 25731 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTC 25673
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||||| || || || ||||| || ||||| || ||||||||||| || | |||||
Sbjct 25672 CCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCG 25613
Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870
||| || || |||| ||||| | ||||| || ||||||||||| || || ||| |
Sbjct 25612 ATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGA 25554
Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930
|||||||| | ||||| || | || || ||||||||||| ||| | | ||
Sbjct 25553 TGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACAT------TAAGG 25500
Query 116931 AGGAG-----AAGCTCC-GTTTGTTGAACGCCATCGAGAC------GATGCCGTGCGTCA 116978
|| || | || || | |||| || || |||||||| | |||| ||||||
Sbjct 25499 AGCAGGCTCAACGCACCTATCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCA 25440
Query 116979 -------------------------------------------AAG-AGAAGGCCGAGTG 116994
||| |||||||||| ||
Sbjct 25439 TTAGCACAGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTG 25380
Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054
||| | | |||||| | | || | | |||| |||| || || ||||| ||
Sbjct 25379 GGCCGTAAGATGGATCCAAGATAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGC 25320
Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114
|| || ||||| ||||||| || || |||||| | ||||| ||| | ||||| ||
Sbjct 25319 CGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCG 25260
Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174
|| || ||||| || || || ||| |||||||||||||||| | ||||| ||||| ||
Sbjct 25259 TGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCA 25200
Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGC-G 117233
|||||||||||| | ||||| || ||| || || || ||| || || |
Sbjct 25199 CACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCATCGTCCAAGC-AAGCAAGCAG 25141
Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC-TG 117292
|| || | | ||||| || || | |||||||| ||| | || || || | |
Sbjct 25140 TCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTC 25081
Query 117293 CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352
|| |||| ||| || || | || | |||| ||||||||| |||||||||||
Sbjct 25080 CCTGTGC-TCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCT 25022
Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412
|| | ||||| |||| || | || ||| | ||||| | ||||||| | |||
Sbjct 25021 GATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTCGAC 24962
Query 117413 TTTATGAACCTCATCTCC 117430
|| ||| | |||||||
Sbjct 24961 TTCATGGAGAACATCTCC 24944
>seq116
Length=121463
Score = 116 bits (128), Expect = 4e-21
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||||||||| || || ||| | || || || | |||| | | | |||| |||||
Sbjct 20523 TCACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACG-TCAAG 20465
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| |||||||| ||| | ||||| ||||| ||||||| ||| |||
Sbjct 20464 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGC 20405
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| || || || || | || |||||| |||||||||||||||||||||| | || ||
Sbjct 20404 AAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTT 20345
Query 40891 CATCTAGT 40898
||||||||
Sbjct 20344 CATCTAGT 20337
>seq344
Length=396322
Score = 114 bits (126), Expect = 1e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || || || ||||| |||||||| |||| |||||| | |||| | | |
Sbjct 110544 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 110485
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||||||||| | |||||||| ||||||
Sbjct 110484 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCA 110425
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
| | ||| || || ||| |||| || | |||||||| ||| ||||||||||||||||
Sbjct 110424 TTTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGG 110365
Query 40880 AGGCCACGCTGCA 40892
|| | || || ||
Sbjct 110364 AGTCTACTCTCCA 110352
Score = 100 bits (110), Expect = 3e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773
|| ||||| |||||||| |||| ||||| | | |||| | | | |||||
Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 110763
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| || | ||||| |||||||| ||| | |||||||| || | |||| ||| |||||
Sbjct 110762 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 110703
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || |||| ||||| ||| || ||||||||||||||||| | || || |||
Sbjct 110702 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 110643
Query 40894 CTAGT 40898
|| ||
Sbjct 110642 CTCGT 110638
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || || || || ||||| |||| |||||| | |
Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | |||| ||||| ||| || | ||||| ||||| ||||| | |||||
Sbjct 110266 GATACTATTGATAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 110208
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||||| | ||| || || ||| |||| || | || ||| | || || ||
Sbjct 110207 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 110148
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| | || || ||||| ||
Sbjct 110147 CATCCAGAAGGAGTCTACTCTTCATCTGGT 110118
Score = 86.0 bits (94), Expect = 6e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|| || ||||| ||||| | |||||||| |||| || | || || || ||| ||||
Sbjct 110005 GATAAGGAGGGTATCCCACCCGACCAGCAGAGACTTATTTTTGCTGGTAAGCAGTTGGAG 109946
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| | | |||||||||||||||||||||| | || || ||||| ||| ||
Sbjct 109945 GATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGCTG 109886
Query 40903 CG 40904
||
Sbjct 109885 CG 109884
>seq359
Length=494912
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/182 (72%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757
||||| ||||| ||||| || || || || ||| |||| || || || |||| | | |
Sbjct 437769 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 437828
Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| || | ||||| || || | ||||| ||||| |||||| | ||||||||||| |
Sbjct 437829 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 437887
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| || || ||||| || || | || || || |||||||||||| || ||
Sbjct 437888 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 437947
Query 40878 GG 40879
||
Sbjct 437948 GG 437949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515215928358080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |