Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq172 167 2e-36 seq116 116 4e-21 seq344 114 1e-20 seq359 91.5 2e-13 >seq172 Length=386049 Score = 167 bits (184), Expect = 2e-36 Identities = 552/858 (64%), Gaps = 73/858 (9%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||||| ||| || | || ||| Sbjct 25791 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 25732 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||||||| | | | || ||| | ||| | | || || Sbjct 25731 TCCAAGGATCTCCA-CGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTC 25673 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| || ||||| || ||||||||||| || | ||||| Sbjct 25672 CCACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCG 25613 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| || || |||| ||||| | ||||| || ||||||||||| || || ||| | Sbjct 25612 ATTCAGCGGAG-AGGTCCAGGTACCTGAGGCTCGCTGCTTCTACGGGTTCCAAATCATGA 25554 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGG 116930 |||||||| | ||||| || | || || ||||||||||| ||| | | || Sbjct 25553 TGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACAT------TAAGG 25500 Query 116931 AGGAG-----AAGCTCC-GTTTGTTGAACGCCATCGAGAC------GATGCCGTGCGTCA 116978 || || | || || | |||| || || |||||||| | |||| |||||| Sbjct 25499 AGCAGGCTCAACGCACCTATCTGTTCAATGCTATCGAGACCAGTAAGTTGCCTCGCGTCA 25440 Query 116979 -------------------------------------------AAG-AGAAGGCCGAGTG 116994 ||| |||||||||| || Sbjct 25439 TTAGCACAGTGCCATATTCTAACACGATCTAGTTCCCTGCATCAAGAAGAAGGCCGACTG 25380 Query 116995 GGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGC 117054 ||| | | |||||| | | || | | |||| |||| || || ||||| || Sbjct 25379 GGCCGTAAGATGGATCCAAGATAAGGACTCTACATTCGCTCAGCGTCTCGTTGCCTTTGC 25320 Query 117055 GGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACG 117114 || || ||||| ||||||| || || |||||| | ||||| ||| | ||||| || Sbjct 25319 CGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGGTTGAAGAAGCG 25260 Query 117115 CGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCA 117174 || || ||||| || || || ||| |||||||||||||||| | ||||| ||||| || Sbjct 25259 TGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGACGAAGGTCTCCA 25200 Query 117175 TTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGC-G 117233 |||||||||||| | ||||| || ||| || || || ||| || || | Sbjct 25199 CACCGACTTTGCCTGCCTCTTGTTCTCCCACTTGAACCATCGTCCAAGC-AAGCAAGCAG 25141 Query 117234 TCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC-TG 117292 || || | | ||||| || || | |||||||| ||| | || || || | | Sbjct 25140 TCCAAGACGTTATTACCGAGGCTGTTGAGATCGAGCAAGAGTTCTTGACTGATGCTCTTC 25081 Query 117293 CCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCC 117352 || |||| ||| || || | || | |||| ||||||||| ||||||||||| Sbjct 25080 CCTGTGC-TCTTCTCGGCATGAACGCTGCTTTGATGAAGCAATACATTGAGTTCGTCGCT 25022 Query 117353 GACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGAC 117412 || | ||||| |||| || | || ||| | ||||| | ||||||| | ||| Sbjct 25021 GATCGTCTGCTCCTCGCTCTCGGTAACGAGAAGTATTACAAGTCCGCCAACCCATTCGAC 24962 Query 117413 TTTATGAACCTCATCTCC 117430 || ||| | ||||||| Sbjct 24961 TTCATGGAGAACATCTCC 24944 >seq116 Length=121463 Score = 116 bits (128), Expect = 4e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||||||||| || || ||| | || || || | |||| | | | |||| ||||| Sbjct 20523 TCACGGGCAAGACAATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACG-TCAAG 20465 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| |||||||| ||| | ||||| ||||| ||||||| ||| ||| Sbjct 20464 TCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGC 20405 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || || | || |||||| |||||||||||||||||||||| | || || Sbjct 20404 AAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTT 20345 Query 40891 CATCTAGT 40898 |||||||| Sbjct 20344 CATCTAGT 20337 >seq344 Length=396322 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| |||||||| |||| |||||| | |||| | | | Sbjct 110544 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 110485 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||||||||| | |||||||| |||||| Sbjct 110484 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCA 110425 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 | | ||| || || ||| |||| || | |||||||| ||| |||||||||||||||| Sbjct 110424 TTTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGG 110365 Query 40880 AGGCCACGCTGCA 40892 || | || || || Sbjct 110364 AGTCTACTCTCCA 110352 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| |||| ||||| | | |||| | | | ||||| Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAAGAGC 110763 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || || | ||||| |||||||| ||| | |||||||| || | |||| ||| ||||| Sbjct 110762 AAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCAAG 110703 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || |||| ||||| ||| || ||||||||||||||||| | || || ||| Sbjct 110702 CAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTCAT 110643 Query 40894 CTAGT 40898 || || Sbjct 110642 CTCGT 110638 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || ||||| |||| |||||| | | Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| ||| || | ||||| ||||| ||||| | ||||| Sbjct 110266 GATACTATTGATAACG-TCAAGTCAAAGATCCAGGACAAGGAGGGTATCCCACCCGACCA 110208 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||||| | ||| || || ||| |||| || | || ||| | || || || Sbjct 110207 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 110148 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 110147 CATCCAGAAGGAGTCTACTCTTCATCTGGT 110118 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || ||||| ||||| | |||||||| |||| || | || || || ||| |||| Sbjct 110005 GATAAGGAGGGTATCCCACCCGACCAGCAGAGACTTATTTTTGCTGGTAAGCAGTTGGAG 109946 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| | | |||||||||||||||||||||| | || || ||||| ||| || Sbjct 109945 GATGGCCGCACTTTGAGCGACTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTGCTG 109886 Query 40903 CG 40904 || Sbjct 109885 CG 109884 >seq359 Length=494912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| ||||| ||||| || || || || ||| |||| || || || |||| | | | Sbjct 437769 TTCGTCAAAACTCTCACCGGAAAGACAATTACCCTCGAGGTAGAGTCCTCCGATACGATT 437828 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | || | ||||| || || | ||||| ||||| |||||| | ||||||||||| | Sbjct 437829 GACAATG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAGCAACGTTT 437887 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || ||||| || || | || || || |||||||||||| || || Sbjct 437888 GATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGAACTCTTTCCGACTACAACATTCAAAA 437947 Query 40878 GG 40879 || Sbjct 437948 GG 437949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515215928358080