Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq344 120 3e-22
seq359 102 7e-17
>seq344
Length=396322
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||||| |||||||| || || |||||||||||| | ||||| ||||||
Sbjct 110346 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCC 110405
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
| ||| ||||||||| | ||||| | |||||| |||||||| |||||||||||||||
Sbjct 110406 AACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 110465
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| ||| || | || | ||||| |||| || | || ||
Sbjct 110466 ATCTTCGACTTGACATTGTCGATGGTATCGGATGAT-TCGACTTCGAGAGTGATGGTCTT 110524
Query 118709 GCCGGTCAGAGTTTTTAC 118726
||| || ||||| || ||
Sbjct 110525 GCCAGTAAGAGTCTTGAC 110542
Score = 109 bits (120), Expect = 5e-19
Identities = 128/173 (74%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| || || || ||||||||||| | |||||| ||||||||||| || |||
Sbjct 110650 GTAGATTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCA 110709
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| |||| | ||||||||| ||||| || ||||||||||||||| || || ||
Sbjct 110710 GCGAAGATCAAACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTG 110769
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| | |||| ||||||| ||||||||||| || | || ||||||||
Sbjct 110770 ACATTGTCGATAGTGTCCGAAGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 110822
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || ||||| ||||| || || || |||||| | ||| ||||||
Sbjct 110130 GTAGACTCCTTCTGGATGTTATAATCAGACAAGGTACGGCCATCCTCCAACTGCTTTCCA 110189
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | ||||| | |||||| ||||| || || ||||||||||| || ||| ||
Sbjct 110190 GCGAAAATGAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTTGACTTG 110249
Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720
|| | || | || || | || | |||||||||| || | || || |||||||||||
Sbjct 110250 ACGTTATCAATAGTATCAGATGAT-TCGACCTCGAGTGTGATTGTCTTTCCGGTCAGAGT 110308
Query 118721 TTTTACAAAAATCTGCAT 118738
|| || |||||||||||
Sbjct 110309 CTTGACGAAAATCTGCAT 110326
>seq359
Length=494912
Score = 102 bits (112), Expect = 7e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|||||||||||||| ||| | ||| || |||||||||||| ||||||||| ||||
Sbjct 437947 TTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 437888
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||| ||||| ||||| || || ||||||||||| || || || || | ||
Sbjct 437887 AAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 437828
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| || || | | ||| ||||||| ||| | || || ||||| |||||||| || ||
Sbjct 437827 ATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGAA 437769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433827714047536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |