Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq487 300 1e-76
seq344 123 2e-23
>seq487
Length=114140
Score = 300 bits (332), Expect = 1e-76
Identities = 584/860 (68%), Gaps = 2/860 (0%)
Strand=Plus/Minus
Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177
|||| || || || || ||||| | |||||||||||||||| | || | || ||||||
Sbjct 16357 TCTGATTACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGG 16298
Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACC-TG 23236
|||| ||||| ||| | ||| | |||| || | | ||| || || ||
Sbjct 16297 TTTGCGCCTCGAGGATGGAGTACCAAAGCTTCTGGGCCTTGA-TGGTCTTGCGACCCTTG 16239
Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296
|||||| |||||||||| | ||| | || ||||||||| |||||||| || || ||
Sbjct 16238 CCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGCAAGA 16179
Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356
||||| | | | || ||||| || |||| | | || ||||| || ||||
Sbjct 16178 CCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATG 16119
Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416
|| ||||| || ||||||||||||||||| || ||||| ||||| || ||||| || |||
Sbjct 16118 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 16059
Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476
||||||| | ||| | || || || || || || ||||| ||||||||||| |
Sbjct 16058 TGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 15999
Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536
|| || || || || | |||||| || ||||| || || || | ||| ||||||||| |
Sbjct 15998 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 15939
Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596
|||| ||||| || || | ||||||||| ||| | ||| || | | ||
Sbjct 15938 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 15879
Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656
| || || | |||| || | | ||| |||||||| | || || ||||| ||
Sbjct 15878 GTGGCACGGATTCTGTGGACATTCAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCA 15819
Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716
|| || ||||| ||||| || || ||||| |||||||| || | ||| ||||||
Sbjct 15818 CAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAG 15759
Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776
|| ||||| | ||| |||| || || |||| | || || || || ||||| |||
Sbjct 15758 CATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTA 15699
Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836
||||| | ||||| | |||||| || ||||| || ||||| || || |||||
Sbjct 15698 AAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGA 15639
Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATT 23896
||||| | || || | ||| ||||||| ||| || | ||| | | ||| | |
Sbjct 15638 ATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGA 15579
Query 23897 TTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGA 23956
|| || ||||| | | | || || |||||||| || | ||||| || || |||
Sbjct 15578 CGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAATCCCGA 15519
Query 23957 TCGTGCACTATGGCCGAATT 23976
|| | || ||||| || ||
Sbjct 15518 TCATAGACAATGGCAGAGTT 15499
>seq344
Length=396322
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||||| ||||||||||| || || || ||||| |||| || ||| | ||
Sbjct 110326 ATGCAGATTTTCGTCAAGACTCTGACCGGAAAGACAATCACACTCGAGGTCGAATCATCT 110267
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | | || | ||||| || ||| | ||||||||| || | || ||||||||
Sbjct 110266 GATACTATTGATAACGTCAAGTCAAAGA-TCCAGGACAAGGAGGGTATCCCACCCGACCA 110208
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || |||||||| || |||||||| || || || ||||||||
Sbjct 110207 GCAGAGACTCATTTTCGCTGGAAAGCAGTTGGAGGATGGCCGTACCTTGTCTGATTATAA 110148
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||| || || || || |||||||||||||| ||| | || | || ||||
Sbjct 110147 CATCCAGAAGGAGTCTACTCTTCATCTGGTTCTTCGCCTTCGTGGTGGTA 110098
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||| |||| || || || || || | || ||||| ||||
Sbjct 110098 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 110039
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||| ||||| || | || |||||||||
Sbjct 110038 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 109979
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || ||||| || |||||||| || ||| ||||||| || |||
Sbjct 109978 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 109919
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || ||||| |||||||| ||
Sbjct 109918 ATCCAGAAGGAGTCTACTCTCCATCTGGTGCT 109887
Score = 102 bits (112), Expect = 7e-17
Identities = 149/208 (72%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276
|| ||||| || ||||| |||| || || | || |||| | |||| | ||||| |
Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGACAATGTCAA---G 110766
Query 31277 AG-AATAGCG--GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333
|| || | | |||||||| ||| | || ||||||||||||||| | || |||||||||
Sbjct 110765 AGCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGC 110706
Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393
|| ||| | || ||| | ||| | ||||| ||||| || || ||||| ||||||
Sbjct 110705 AAGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTT 110646
Query 31394 CATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || || | || | |||||||
Sbjct 110645 CATCTCGTCCTCCGTCTTCGTGGCGGTA 110618
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || ||||| || ||||| |||| || ||| | ||||| | |||
Sbjct 110544 TCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTCGAATCATCCGATACCATCG 110485
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| || || |||||||| ||| | || |||||||||||| | || |
Sbjct 110484 ACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGCATCCCTCCCGACCAGCAGAGACTCA 110425
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| |||||||| || |||||||| || || | |||||| ||||| || || |
Sbjct 110424 TTTTCGCTGGAAAGCAGTTGGAGGATGGCCGCACCCTATCCGATTACAACATCCAGAAGG 110365
Query 31383 AATCGACTCTTCATCTGGTACT 31404
| || ||||| || |||| ||
Sbjct 110364 AGTCTACTCTCCACTTGGTCCT 110343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445763569383360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |