Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq172 113 9e-20 seq202 96.9 7e-15 seq487 89.7 1e-12 >seq172 Length=386049 Score = 113 bits (124), Expect = 9e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902 ||||| || ||||||||||||| | ||||| | | ||||| ||| || || | Sbjct 25407 TTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCT 25349 Query 101903 ---TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959 || || | | | ||||||||||| || ||||| || |||||||| ||| || Sbjct 25348 ACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCA 25289 Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019 ||||| || || |||||| | ||||| | ||| | |||| ||||| |||| |||||| Sbjct 25288 TTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAAC 25229 Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| |||| || | ||||||||||| || ||||||||| ||| | |||| Sbjct 25228 GAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTT 25176 >seq202 Length=612551 Score = 96.9 bits (106), Expect = 7e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA- 35448 |||| || ||| | ||||| |||||||| || || ||| | ||||||||||| ||||| Sbjct 342856 GCAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATAC 342915 Query 35449 --TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA 35506 ||| || | |||||||| ||| | ||| |||| || | || | | | Sbjct 342916 GTCGATGCC---GAGACGGATTATACAGGACAAGGTGTTGACCAGCTTGCGGAGGTGATC 342972 Query 35507 AAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATG 35566 | | |||| | | ||||| ||||| ||||||| ||| | | || |||||||||| | Sbjct 342973 CATAAACTGAAAAACAATCCTTATGATCGAAGGATAATTTTTTCTGCCTGGAATCCTAAG 343032 Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||| | | || ||||| || ||||| ||||||||| || || ||||| || Sbjct 343033 GATATGAAACTCATGGCCCTACCTCCCTGCCACATGTTCGCACAGTTTTACGT 343085 >seq487 Length=114140 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451 ||| |||||||| ||||| || |||||||| | |||| ||| || || || | || || Sbjct 16245 ACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATC 16186 Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505 | ||| || |||||||||| |||||||||||| | ||| ||||||| || Sbjct 16185 AGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA----- 16131 Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | || |||||||||||| | | ||| | ||| ||| ||||| Sbjct 16130 -ACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATC 16084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577559045140