Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq172 113 9e-20
seq202 96.9 7e-15
seq487 89.7 1e-12
>seq172
Length=386049
Score = 113 bits (124), Expect = 9e-20
Identities = 166/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 101843 TTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT 101902
||||| || ||||||||||||| | ||||| | | ||||| ||| || || |
Sbjct 25407 TTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCCGTAAGATGGATCCAAGATAAGGACTCT 25349
Query 101903 ---TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCA 101959
|| || | | | ||||||||||| || ||||| || |||||||| ||| ||
Sbjct 25348 ACATTCGCTCAGCGTCTCGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCA 25289
Query 101960 TTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAAT 102019
||||| || || |||||| | ||||| | ||| | |||| ||||| |||| ||||||
Sbjct 25288 TTCGCCTCTATATTCTGGTTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAAC 25229
Query 102020 GAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072
||| |||| || | ||||||||||| || ||||||||| ||| | ||||
Sbjct 25228 GAGCTCATCTCCCGTGACGAAGGTCTCCACACCGACTTTGCCTGCCTCTTGTT 25176
>seq202
Length=612551
Score = 96.9 bits (106), Expect = 7e-15
Identities = 162/233 (70%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA- 35448
|||| || ||| | ||||| |||||||| || || ||| | ||||||||||| |||||
Sbjct 342856 GCAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATAC 342915
Query 35449 --TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTA 35506
||| || | |||||||| ||| | ||| |||| || | || | | |
Sbjct 342916 GTCGATGCC---GAGACGGATTATACAGGACAAGGTGTTGACCAGCTTGCGGAGGTGATC 342972
Query 35507 AAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATG 35566
| | |||| | | ||||| ||||| ||||||| ||| | | || |||||||||| |
Sbjct 342973 CATAAACTGAAAAACAATCCTTATGATCGAAGGATAATTTTTTCTGCCTGGAATCCTAAG 343032
Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619
||| | | || ||||| || ||||| ||||||||| || || ||||| ||
Sbjct 343033 GATATGAAACTCATGGCCCTACCTCCCTGCCACATGTTCGCACAGTTTTACGT 343085
>seq487
Length=114140
Score = 89.7 bits (98), Expect = 1e-12
Identities = 120/168 (71%), Gaps = 12/168 (7%)
Strand=Plus/Minus
Query 94392 ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTC 94451
||| |||||||| ||||| || |||||||| | |||| ||| || || || | || ||
Sbjct 16245 ACCCTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATC 16186
Query 94452 GGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCCCAGCCTT 94505
| ||| || |||||||||| |||||||||||| | ||| ||||||| ||
Sbjct 16185 AGCAAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCA----- 16131
Query 94506 CACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
|| | || |||||||||||| | | ||| | ||| ||| |||||
Sbjct 16130 -ACACGCTTCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATC 16084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989577559045140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |