Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq487 167 3e-36
seq172 84.2 3e-11
>seq487
Length=114140
Score = 167 bits (184), Expect = 3e-36
Identities = 1189/1890 (63%), Gaps = 59/1890 (3%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| | |||| || || ||||||||||| | ||| | | ||||| ||
Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
||||| ||||| ||||| || ||||||||||| || | || |||||||| | | |
Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| || || | || ||||| | ||| || |||| ||| ||||| | |||| |
Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121
Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | ||| || ||||| || ||||| || || || | ||||| || | ||| |
Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| || || | || | ||| ||||| || || || || | | |||| || ||
Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881
Query 65316 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 65373
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 16823
Query 65374 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 65429
||| || || || | |||| || ||| | ||||| |||
Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 16767
Query 65430 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 65488
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 16766 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 16708
Query 65489 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 65548
|||||||||| | || || | || || || | || ||||| | |||||
Sbjct 16707 CTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAG 16649
Query 65549 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 65607
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 16648 CTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 16590
Query 65608 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 65666
|| | || || |||| ||| || || || || || || || || || | || |
Sbjct 16589 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 16530
Query 65667 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC-GC--TCATCT---ATT 65720
|| | || | | ||||| | || || |||| || | | || |||| | |
Sbjct 16529 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 16470
Query 65721 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 65780
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 16469 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 16411
Query 65781 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839
|||| | ||||| ||||| ||||| | |||||| || | || | |||||
Sbjct 16410 GTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 16351
Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899
|||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 16350 ACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 16291
Query 65900 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TT 65955
|| | || | | ||| | | || | |||| | || | ||| | ||| ||
Sbjct 16290 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTT 16235
Query 65956 CTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013
|| ||||| | ||| | | | || || ||||| || |||||| | | ||
Sbjct 16234 CTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACC 16177
Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 66070
|| || || | || ||||||| | ||| | | | ||| |||| || || |||||
Sbjct 16176 GGGGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCAT 16120
Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130
|||||||| |||||||| ||||| || | ||| | | | | |||||| |||||
Sbjct 16119 GAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCC 16060
Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190
|||||| ||||| |||||| | | | |||| ||||| || || | ||| ||
Sbjct 16059 GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 16000
Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250
|| | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |
Sbjct 15999 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 15940
Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310
||||| | ||| |||| |||||| ||||| | || || || || | || || |||
Sbjct 15939 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCC 15880
Query 66311 ACTTGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366
| | ||||| || | || ||| ||||| || || || || | || ||||| |
Sbjct 15879 AGTGGCACGGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCA 15824
Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426
|| || || | ||||| || || || || ||||| || ||| |||||| | |
Sbjct 15823 TGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCA 15764
Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486
|| || ||| | ||| | || || || ||| | ||| ||||| ||||
Sbjct 15763 AGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGT 15704
Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546
| ||||| | || || | | |||||| ||||| ||||| || |||||
Sbjct 15703 GTGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCC 15644
Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606
||||| || || || || | ||| | |||||| || || | ||| | |||||| |
Sbjct 15643 CGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCT 15584
Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 66664
| | | ||| ||| | || | ||| || || ||||| || | ||| |||||
Sbjct 15583 CGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA- 15525
Query 66665 GTCTCGTTCGTAAATAATAACCGAGTTGAG 66694
|| || || || | ||| | ||||||||
Sbjct 15524 -TCCCGATCATAGACAATGGCAGAGTTGAG 15496
>seq172
Length=386049
Score = 84.2 bits (92), Expect = 3e-11
Identities = 218/332 (66%), Gaps = 3/332 (1%)
Strand=Plus/Plus
Query 36380 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 36439
||||| |||||||| || |||||| | || | || |||| ||||| || ||
Sbjct 25460 GTCTCGATAGCATTGAACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATG 25519
Query 36440 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 36499
| ||| || | || || || ||||| || || ||||| || |||||||| ||
Sbjct 25520 AGAAGGGAGTATGTCTCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAG 25579
Query 36500 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 36559
| |||||| | | ||| || ||| | ||||| || | || || || || |||
Sbjct 25580 CGAGCCTCAGGTACCTGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATT 25639
Query 36560 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT 36619
|||||| || || || || || | || || | ||| ||| | || | |
Sbjct 25640 CCGTCAGATGCAGCGAAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTG 25699
Query 36620 AGT---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 36676
||| || ||||| || | || ||| || || | ||| | |||||| | ||||| |||
Sbjct 25700 AGTCTGTTGTTCCAGTCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAAT 25759
Query 36677 GATGCCTCTGCCTTTTTATACATATTCCAGAT 36708
|| ||||||||||| || ||||| | ||||||
Sbjct 25760 GAAGCCTCTGCCTTCTTGTACATCTGCCAGAT 25791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658168620602720
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