Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq487 201 2e-46
seq172 109 8e-19
>seq487
Length=114140
Score = 201 bits (222), Expect = 2e-46
Identities = 1189/1882 (63%), Gaps = 43/1882 (2%)
Strand=Plus/Minus
Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301
Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837
|| | |||| || ||| ||||||||||| | ||| | | ||||| ||
Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241
Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897
||||| ||||| ||||| || ||||||||||| || | || |||||||| | | |
Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181
Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957
|| || || | || ||||| | ||| || |||| ||| ||||| | |||| |
Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121
Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014
|| | ||| || ||||| || ||||| || || || | ||||| || | || |
Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061
Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001
Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134
| || || | || | ||| ||||| || ||||| || | | || || ||
Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941
Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194
| |||||| || || ||||||||||| || || | ||||| || | |||||||
Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881
Query 79195 T-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253
| || | |||||| | || | | |||| ||||||||||| | || ||| ||
Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT 16822
Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313
||| | ||| ||||| || || | ||| || ||| |||||| || ||||
Sbjct 16821 CCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGT 16762
Query 79314 TCCTTCCTTTTCGGCTAATTC-ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGA 79372
|| | || | || | || ||| | || || || ||| || ||||| ||||
Sbjct 16761 ACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCGA 16703
Query 79373 AAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-AATA 79431
| |||| | ||||| | || || || | || ||||| | ||||| |
Sbjct 16702 AGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAGCTAGG 16644
Query 79432 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATT 79491
|| | || || | || || ||||||| | | |||||||| || | ||| | ||
Sbjct 16643 AARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTT 16585
Query 79492 TC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550
| || || |||| ||| || || || || || || || || || | ||| | || |
Sbjct 16584 GCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAC 16525
Query 79551 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT------ACAAA 79604
|| | | ||||| | || || |||| || | | ||||| || || |
Sbjct 16524 AACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTA 16465
Query 79605 CATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATT 79663
| | || | ||| |||| |||||||| || ||||| | || | | || ||||
Sbjct 16464 AGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACAGTATT 16406
Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723
| || || |||||||| || | ||||| || | || | ||||||||||
Sbjct 16405 CAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCT 16346
Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783
| ||| || |||||||| || || ||||| || | || || || | || | || |
Sbjct 16345 TACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGA 16286
Query 79784 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTT 79839
|| | | ||| | | || | |||| | || | |||| | ||| ||||
Sbjct 16285 GGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTGCC 16230
Query 79840 TCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897
||||| || | ||| | | | || || ||||| || ||||||| | | || || |
Sbjct 16229 TCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGC 16172
Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957
| |||| || ||||||| | ||| |||| | || || || ||||| |||||||
Sbjct 16171 ACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGAT 16112
Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017
| |||||||| ||||| || ||||| | | | | ||||| ||||| ||||
Sbjct 16111 CTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCT 16052
Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077
|| ||||| |||||| | | | ||||| ||||| || || | ||| || || | |
Sbjct 16051 TTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAG 15992
Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137
| || || || || ||||| ||||| || | ||||| || ||||| || |||||| |
Sbjct 15991 CACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGA 15932
Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197
||| |||| |||||| ||||| | || || || || | || || |||| ||||||
Sbjct 15931 GCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC 15872
Query 80198 GAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253
| || | || ||| ||||| || || || || | || ||||| | || ||
Sbjct 15871 GGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAA 15816
Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313
|| | ||||| || || || || || || || || |||||| | | || ||
Sbjct 15815 GTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCAT 15756
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||| | ||| | || || || ||| | ||| ||||| ||||| |||||
Sbjct 15755 GAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAG 15696
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433
| || |||| | |||||| ||||| ||||| || ||||| |||||
Sbjct 15695 TACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATA 15636
Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493
|| || || || | ||| | |||||| || || | ||| | |||||| | |
Sbjct 15635 CCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGG 15576
Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 80551
| | ||| ||| | || | ||| || || ||||| || | ||| ||||| || || |
Sbjct 15575 AGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TCCCGAT 15518
Query 80552 CGTAAATAATAACCGAGTTGAG 80573
| || | ||| | ||||||||
Sbjct 15517 CATAGACAATGGCAGAGTTGAG 15496
>seq172
Length=386049
Score = 109 bits (120), Expect = 8e-19
Identities = 300/457 (66%), Gaps = 2/457 (0%)
Strand=Plus/Plus
Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712
|| |||||| || ||||||||| || | ||||| || ||||| || || || |||||
Sbjct 24878 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 24937
Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772
| | || || || |||||||| || || || |||| || ||| | || |
Sbjct 24938 GGCAAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 24996
Query 49773 TCCCAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCAC 49831
| || | || | || | ||| ||||| || || || ||| ||||||| ||
Sbjct 24997 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 25056
Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891
||||| || | ||| | |||||||| |||| | || ||||| || || |
Sbjct 25057 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 25116
Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951
| || || || |||| | || | || | || || |||| || || |
Sbjct 25117 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 25176
Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011
||| | || || || ||| ||| ||||| ||||| | || || |||||||| |
Sbjct 25177 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 25236
Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071
| || || || ||||| || |||||||| || | ||| ||||| || || ||||| || |
Sbjct 25237 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 25296
Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108
| |||||||| || || || |||||||||||||| ||
Sbjct 25297 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAG 25333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718264238993120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |