Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq487 201 2e-46 seq172 109 8e-19 >seq487 Length=114140 Score = 201 bits (222), Expect = 2e-46 Identities = 1189/1882 (63%), Gaps = 43/1882 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| || ||| ||||||||||| | ||| | | ||||| || Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || || || | || ||||| | ||| || |||| ||| ||||| | |||| | Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | ||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | || || | || | ||| ||||| || ||||| || | | || || || Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | |||||| || || ||||||||||| || || | ||||| || | ||||||| Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881 Query 79195 T-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 | || | |||||| | || | | |||| ||||||||||| | || ||| || Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCAAGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCTT 16822 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | ||| ||||| || || | ||| || ||| |||||| || |||| Sbjct 16821 CCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGGGGAACCTTCGTATGTCTCGTAAGT 16762 Query 79314 TCCTTCCTTTTCGGCTAATTC-ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGA 79372 || | || | || | || ||| | || || || ||| || ||||| |||| Sbjct 16761 ACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGTCTCGA 16703 Query 79373 AAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAG-AATA 79431 | |||| | ||||| | || || || | || ||||| | ||||| | Sbjct 16702 AGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAGCTAGG 16644 Query 79432 AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATT 79491 || | || || | || || ||||||| | | |||||||| || | ||| | || Sbjct 16643 AARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-GCTCTT 16585 Query 79492 TC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTAT 79550 | || || |||| ||| || || || || || || || || || | ||| | || | Sbjct 16584 GCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTCACGAC 16525 Query 79551 TACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATT------ACAAA 79604 || | | ||||| | || || |||| || | | ||||| || || | Sbjct 16524 AACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTGACGTA 16465 Query 79605 CATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATT 79663 | | || | ||| |||| |||||||| || ||||| | || | | || |||| Sbjct 16464 AGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACAGTATT 16406 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | || || |||||||| || | ||||| || | || | |||||||||| Sbjct 16405 CAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATTACTCT 16346 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 | ||| || |||||||| || || ||||| || | || || || | || | || | Sbjct 16345 TACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGCCTCGA 16286 Query 79784 TAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTT 79839 || | | ||| | | || | |||| | || | |||| | ||| |||| Sbjct 16285 GGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTTCTGCC 16230 Query 79840 TCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGAC 79897 ||||| || | ||| | | | || || ||||| || ||||||| | | || || | Sbjct 16229 TCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCGGGGC 16172 Query 79898 ATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGAT 79957 | |||| || ||||||| | ||| |||| | || || || ||||| ||||||| Sbjct 16171 ACTCGTTGGGGCACATCAGTGTCCATGTACCATTCTTCTCAACACGCTTCATGAAGAGAT 16112 Query 79958 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 | |||||||| ||||| || ||||| | | | | ||||| ||||| |||| Sbjct 16111 CTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCT 16052 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 || ||||| |||||| | | | ||||| ||||| || || | ||| || || | | Sbjct 16051 TTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATCGCGAAAG 15992 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || || || || ||||| ||||| || | ||||| || ||||| || |||||| | Sbjct 15991 CACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAAACTCGGA 15932 Query 80138 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 80197 ||| |||| |||||| ||||| | || || || || | || || |||| |||||| Sbjct 15931 GCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCAGTGGCAC 15872 Query 80198 GAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 80253 | || | || ||| ||||| || || || || | || ||||| | || || Sbjct 15871 GGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCATGGCACAA 15816 Query 80254 CGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAG 80313 || | ||||| || || || || || || || || |||||| | | || || Sbjct 15815 GTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAAGAAGCAT 15756 Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||| | ||| | || || || ||| | ||| ||||| ||||| ||||| Sbjct 15755 GAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTGTGTAAAG 15696 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | || |||| | |||||| ||||| ||||| || ||||| ||||| Sbjct 15695 TACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCCGTGAATA 15636 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || || || | ||| | |||||| || || | ||| | |||||| | | Sbjct 15635 CCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTCGAGACGG 15576 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 80551 | | ||| ||| | || | ||| || || ||||| || | ||| ||||| || || | Sbjct 15575 AGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA--TCCCGAT 15518 Query 80552 CGTAAATAATAACCGAGTTGAG 80573 | || | ||| | |||||||| Sbjct 15517 CATAGACAATGGCAGAGTTGAG 15496 >seq172 Length=386049 Score = 109 bits (120), Expect = 8e-19 Identities = 300/457 (66%), Gaps = 2/457 (0%) Strand=Plus/Plus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || |||||| || ||||||||| || | ||||| || ||||| || || || ||||| Sbjct 24878 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 24937 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 | | || || || |||||||| || || || |||| || ||| | || | Sbjct 24938 GGCAAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 24996 Query 49773 TCCCAATTCAGAA-ATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCAC 49831 | || | || | || | ||| ||||| || || || ||| ||||||| || Sbjct 24997 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 25056 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || | ||| | |||||||| |||| | || ||||| || || | Sbjct 25057 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 25116 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 | || || || |||| | || | || | || || |||| || || | Sbjct 25117 CAGCCTCGGTAATAACGTCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGAGA 25176 Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| | || || || ||| ||| ||||| ||||| | || || |||||||| | Sbjct 25177 ACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGAGA 25236 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || || || ||||| || |||||||| || | ||| ||||| || || ||||| || | Sbjct 25237 AGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACCGG 25296 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 | |||||||| || || || |||||||||||||| || Sbjct 25297 AGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAG 25333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264238993120