Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq487 107 3e-18 >seq487 Length=114140 Score = 107 bits (118), Expect = 3e-18 Identities = 193/279 (69%), Gaps = 5/279 (2%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || || |||||||||| ||| || || | ||||| || ||||||||||| || || ||| Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919 || | |||| || || ||||||||||| | ||| |||| | ||||| || Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAG-TTGGATCCTTCAT 17242 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || |||||||| || || ||||||||||| || | || |||||||| | | Sbjct 17241 GTGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAAC 17182 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 ||| || || | || ||||| | ||| || |||| ||| ||||| | |||| Sbjct 17181 GATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAAT 17122 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAAT 71075 ||| | ||| || ||||| || ||||| || || || Sbjct 17121 GTTAGGGACATTTTGGATGGAACCTCCATCGGCGATGAT 17083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671134938266080