Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq172 125 1e-23 seq487 104 3e-17 >seq172 Length=386049 Score = 125 bits (138), Expect = 1e-23 Identities = 205/291 (70%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| |||| || || ||||| | |||||| | |||||| Sbjct 25791 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 25732 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||| ||| | | | | | ||| |||| || | ||| | || Sbjct 25731 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 25672 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| || | || || ||||| |||||||| || || || ||| Sbjct 25671 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCGA 25612 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255 ||| |||| | ||| | || |||| ||| ||||| ||||| |||||||||||| Sbjct 25611 TTCAGCGGAGAG--GTCCAGGTACCTGAGG-CTCGCTGCTTCTACGGGTTCCAAATCATG 25555 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306 || |||||| | ||||| || | ||||| || || |||| |||||| Sbjct 25554 ATGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATT 25504 >seq487 Length=114140 Score = 104 bits (114), Expect = 3e-17 Identities = 355/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 |||||||| ||| ||| || | || || |||||| || | | ||| || | || | Sbjct 15898 ACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCA-G 15956 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||| ||| ||||| || ||||| || || || ||| | || ||||| | || || || Sbjct 15957 ATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATG 16016 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || ||||| || | || | || || ||| || || || | || Sbjct 16017 GCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCG 16076 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | || | || || || || ||| | |||||| | ||||||||||| || | | Sbjct 16077 CGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAA 16136 Query 97046 CGGTGGCTAC-TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 ||| ||| |||| || ||||||||| || || |||||||| | ||| | | Sbjct 16137 GAATGG-TACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACG 16195 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGA 97163 | || || |||||||| ||| | |||||| ||| ||| | || |||| | Sbjct 16196 GTGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAAGACCA 16255 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || | || | |||| || ||| | ||||| | ||| || ||||| |||| || Sbjct 16256 -TCAAGGCCC-AGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCC 16313 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| |||||||||||| | || || || || || || || | || ||||| Sbjct 16314 TTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTGGTACCAT 16373 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | |||||||||| ||||| || || || || ||| | || |||||| || || Sbjct 16374 CCGCAGCTCCAATCTCTGCACAGAGATCGTTGAATACTGTGCACCTGACGAGGTCGCTGT 16433 Query 97343 TTG 97345 ||| Sbjct 16434 TTG 16436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741054494274080