Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq172 125 1e-23
seq487 104 3e-17
>seq172
Length=386049
Score = 125 bits (138), Expect = 1e-23
Identities = 205/291 (70%), Gaps = 6/291 (2%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| |||| || || ||||| | |||||| | ||||||
Sbjct 25791 ATCTGGCAGATGTACAAGAAGGCAGAGGCTTCATTCTGGACCGCCGAAGAAATTGATCTG 25732
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||| || |||| ||| | | | | | ||| |||| || | ||| | ||
Sbjct 25731 TCCAAGGATCTCCACGACTGGAACAACAGACTCAATGACGATGAGAGATACTTTGTCTCC 25672
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||| || | || ||||| || | || || ||||| |||||||| || || || |||
Sbjct 25671 CACGTTCTTGCATTCTTCGCTGCATCTGACGGAATTGTCAACGAGAACCTCCTGGAGCGA 25612
Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATG 125255
||| |||| | ||| | || |||| ||| ||||| ||||| ||||||||||||
Sbjct 25611 TTCAGCGGAGAG--GTCCAGGTACCTGAGG-CTCGCTGCTTCTACGGGTTCCAAATCATG 25555
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATT 125306
|| |||||| | ||||| || | ||||| || || |||| ||||||
Sbjct 25554 ATGGAGAACATCCACTCCGAGACATACTCCCTTCTCATCGACACATACATT 25504
>seq487
Length=114140
Score = 104 bits (114), Expect = 3e-17
Identities = 355/543 (65%), Gaps = 8/543 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|||||||| ||| ||| || | || || |||||| || | | ||| || | || |
Sbjct 15898 ACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACAGCCA-G 15956
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
||| ||| ||||| || ||||| || || || ||| | || ||||| | || || ||
Sbjct 15957 ATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAGCCATG 16016
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| || || ||||| || | || | || || ||| || || || | ||
Sbjct 16017 GCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAAGTTCG 16076
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|| | || | || || || || ||| | |||||| | ||||||||||| || | |
Sbjct 16077 CGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTTGAGAA 16136
Query 97046 CGGTGGCTAC-TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
||| ||| |||| || ||||||||| || || |||||||| | ||| | |
Sbjct 16137 GAATGG-TACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCTGATGTTTACG 16195
Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGA 97163
| || || |||||||| ||| | |||||| ||| ||| | || |||| |
Sbjct 16196 GTGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGTCGCAAGACCA 16255
Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222
|| | || | |||| || ||| | ||||| | ||| || ||||| |||| ||
Sbjct 16256 -TCAAGGCCC-AGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACCGGAAACCC 16313
Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282
| ||| |||||||||||| | || || || || || || || | || |||||
Sbjct 16314 TTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCTTGGTACCAT 16373
Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342
| |||||||||| ||||| || || || || ||| | || |||||| || ||
Sbjct 16374 CCGCAGCTCCAATCTCTGCACAGAGATCGTTGAATACTGTGCACCTGACGAGGTCGCTGT 16433
Query 97343 TTG 97345
|||
Sbjct 16434 TTG 16436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741054494274080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |