Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq172 102 2e-16 seq116 100 7e-16 seq344 95.1 3e-14 >seq172 Length=386049 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||||||||| || ||||| ||||| || || || || ||| |||| || ||| Sbjct 25330 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCCGGTTCATTCGCCTCTATATTCTGG 25271 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | || || |||||||| | || ||||| ||||| | || | | ||| Sbjct 25270 TTGAAGAAGCGTGGTCTGATGCCAGGTCTTACCTTCTCCAACGAGCTCATCTCCCGTGAC 25211 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 |||||| | ||| |||||| || || Sbjct 25210 GAAGGTCTCCACACCGACTTTGCCTG 25185 >seq116 Length=121463 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||||||| | || || || ||||| || || ||||| || || || | || ||| Sbjct 20334 AGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCT 20393 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || || || || || | ||||| || || || || || || || ||| Sbjct 20394 TCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGAATGCCCTCCTTGTCC 20453 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || || || || | |||||| || ||||||||||| ||||| ||| Sbjct 20454 TGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTACCTCTAGGGTAATTGTC 20513 Query 104528 TTACCAGT 104535 || || || Sbjct 20514 TTGCCCGT 20521 >seq344 Length=396322 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||| || ||||| || || ||||| | ||| | || || Sbjct 109887 AGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCC 109946 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || || ||||||||||| || ||||| || || || || || || || |||||| Sbjct 109947 TCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTATCC 110006 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| | || || || || | || || | || || || || ||||||||| Sbjct 110007 TGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATAGTC 110066 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || |||||||| Sbjct 110067 TTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151390905835664