Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq344 113 4e-20 >seq344 Length=396322 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | |||||| ||||| || | ||| || ||||||| |||| | | Sbjct 109884 CGCAGCACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCA 109943 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||| ||| || || |||| || | ||| ||||| || || || ||||| || || Sbjct 109944 TCCTCCAACTGCTTACCAGCAAAAATAAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTA 110003 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||||||| | ||| ||||||| || || || | || || Sbjct 110004 TCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCAGACGACTCAACTTCCAGAGTAATA 110063 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| | ||| || || ||||||||||| Sbjct 110064 GTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 110098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||| ||||| || | ||| |||||| | ||| | ||||||| Sbjct 110346 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGATAGGGTGCGGCCATCCTCC 110405 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| ||||| | || || | ||| ||||| || ||||| || || || ||||| | Sbjct 110406 AACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCTTGG 110465 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | |||||| | ||| || || | ||||| || | |||||||| || Sbjct 110466 ATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACTTCGAGAGTGATGGTCTTG 110525 Query 94979 CCAGTAAGAGTTTTCAC 94995 ||||||||||| || || Sbjct 110526 CCAGTAAGAGTCTTGAC 110542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448288353350880