Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq487 163 4e-35 >seq487 Length=114140 Score = 163 bits (180), Expect = 4e-35 Identities = 1186/1889 (63%), Gaps = 57/1889 (3%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||||||||||||||| || | | ||||| || |||||||| || || || ||| Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | |||| || || ||||||||||| | ||| | | ||||| || Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| ||||| ||||| || ||||||||||| || | || |||||||| | | | Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || || || | || ||||| | ||| || |||| ||| ||||| | |||| | Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 || | ||| || ||||| || ||||| || || || | ||||| || | ||| | Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || | | ||| | | | | | | || ||||| ||||| ||||| ||| Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 | || || | || | ||| ||||| || || || || | |||| || || Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | |||||| || ||||| |||||||| || || | ||||| || | ||||||| Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881 Query 62472 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529 | || | |||||| | || | |||| |||| | ||||||||| | ||| ||| Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 16823 Query 62530 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62585 ||| || || || | |||| || ||| | ||||| ||| Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 16767 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644 || | || | || || || || || ||| | || || ||| ||| || ||||| Sbjct 16766 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 16708 Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704 |||||||||| | || || | || || || | || ||||| | ||||| Sbjct 16707 CTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAG 16649 Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 | || | || || | || || ||||||| | | |||||||| || | ||| | Sbjct 16648 CTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 16590 Query 62764 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822 || | || || |||| ||| || || || || || || || || || | || | Sbjct 16589 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 16530 Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62876 || | || | | ||||| | || || |||| || | | ||||| || Sbjct 16529 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 16470 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 || | | | |||| ||| |||| |||||||| || ||||| | || | | || Sbjct 16469 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 16411 Query 62937 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 |||| | ||||| ||||| ||||| | ||| || || | || | ||||| Sbjct 16410 GTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 16351 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 |||||| ||| || |||||||| || || ||||| || | || || || | || | Sbjct 16350 ACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 16291 Query 63056 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63112 || | || | | ||| | | || | ||||| || | || | | | | ||| Sbjct 16290 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCTTGATGGT--CTTGCGACCCTTGCCTTC 16234 Query 63113 TCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170 | ||||| | ||| | | | || || ||||| || |||||| | | || Sbjct 16233 TGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCG 16176 Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 63227 || || || | || ||||||| | ||| | | | ||| |||| || || ||||| Sbjct 16175 GGGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATG 16119 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||||||| |||||||| ||||| || ||||| | | | | |||||| ||||| Sbjct 16118 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 16059 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || Sbjct 16058 TGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 15999 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | | ||||| || || ||||| ||||| || | ||||| || ||||| || || Sbjct 15998 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 15939 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 |||| | ||| |||| ||||||||| || | || || || || | || || |||| Sbjct 15938 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 15879 Query 63468 CTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 ||||||| || | || ||| ||||| || || || || | || ||||| | Sbjct 15878 GTGGCACGGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCAT 15823 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 || || || | || || || ||||| || || || || || |||||| | | Sbjct 15822 GGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAA 15763 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || || ||| | ||| | || || || ||| | ||| ||||| ||||| Sbjct 15762 GAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTG 15703 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703 ||||| | || || | | |||||| ||||| ||||| || ||||| Sbjct 15702 TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCC 15643 Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763 ||||| || || || || | ||| | |||||| || || | ||| | |||||| | Sbjct 15642 GTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTC 15583 Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 63821 | | | ||| ||| | || | ||| || || ||||| || | ||| ||||| Sbjct 15582 GAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA-- 15525 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAG 63850 || || || || | ||| | |||||||| Sbjct 15524 TCCCGATCATAGACAATGGCAGAGTTGAG 15496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943244285280