Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq487 163 4e-35
>seq487
Length=114140
Score = 163 bits (180), Expect = 4e-35
Identities = 1186/1889 (63%), Gaps = 57/1889 (3%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| || || ||||||||||| | ||| | | ||||| ||
Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
||||| ||||| ||||| || ||||||||||| || | || |||||||| | | |
Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || || | || ||||| | ||| || |||| ||| ||||| | |||| |
Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121
Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | ||| || ||||| || ||||| || || || | ||||| || | ||| |
Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| || || | || | ||| ||||| || || || || | |||| || ||
Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941
Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881
Query 62472 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 16823
Query 62530 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62585
||| || || || | |||| || ||| | ||||| |||
Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 16767
Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62644
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 16766 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 16708
Query 62645 TTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62704
|||||||||| | || || | || || || | || ||||| | |||||
Sbjct 16707 CTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAG 16649
Query 62705 -AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 16648 CTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 16590
Query 62764 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62822
|| | || || |||| ||| || || || || || || || || || | || |
Sbjct 16589 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 16530
Query 62823 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62876
|| | || | | ||||| | || || |||| || | | ||||| ||
Sbjct 16529 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 16470
Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 16469 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 16411
Query 62937 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995
|||| | ||||| ||||| ||||| | ||| || || | || | |||||
Sbjct 16410 GTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 16351
Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055
|||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 16350 ACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 16291
Query 63056 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC--TCCTTTC 63112
|| | || | | ||| | | || | ||||| || | || | | | | |||
Sbjct 16290 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCTTGATGGT--CTTGCGACCCTTGCCTTC 16234
Query 63113 TCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170
| ||||| | ||| | | | || || ||||| || |||||| | | ||
Sbjct 16233 TGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACCG 16176
Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCATA 63227
|| || || | || ||||||| | ||| | | | ||| |||| || || |||||
Sbjct 16175 GGGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCATG 16119
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|||||||| |||||||| ||||| || ||||| | | | | |||||| |||||
Sbjct 16118 AAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCCG 16059
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
|||||| ||||| |||||| | | | ||||| ||||| || || | ||| ||
Sbjct 16058 TGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGATC 15999
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | | | ||||| || || ||||| ||||| || | ||||| || ||||| || ||
Sbjct 15998 GCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAAA 15939
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|||| | ||| |||| ||||||||| || | || || || || | || || ||||
Sbjct 15938 ACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCCA 15879
Query 63468 CTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523
||||||| || | || ||| ||||| || || || || | || ||||| |
Sbjct 15878 GTGGCACGGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCAT 15823
Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583
|| || || | || || || ||||| || || || || || |||||| | |
Sbjct 15822 GGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCAA 15763
Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643
|| || ||| | ||| | || || || ||| | ||| ||||| |||||
Sbjct 15762 GAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGTG 15703
Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63703
||||| | || || | | |||||| ||||| ||||| || |||||
Sbjct 15702 TGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCCC 15643
Query 63704 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63763
||||| || || || || | ||| | |||||| || || | ||| | |||||| |
Sbjct 15642 GTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCTC 15583
Query 63764 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAG 63821
| | | ||| ||| | || | ||| || || ||||| || | ||| |||||
Sbjct 15582 GAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA-- 15525
Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAG 63850
|| || || || | ||| | ||||||||
Sbjct 15524 TCCCGATCATAGACAATGGCAGAGTTGAG 15496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622943244285280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |