Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq487 143 3e-29 seq116 87.8 2e-12 >seq487 Length=114140 Score = 143 bits (158), Expect = 3e-29 Identities = 429/647 (66%), Gaps = 19/647 (3%) Strand=Plus/Minus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 ||||||||| |||||||| || |||||||| |||| ||||| | || || ||| Sbjct 16242 CTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGC 16183 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356 | |||||| ||||||| ||||||||||| || |||| | || | || ||| || | || Sbjct 16182 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCT-TCTCAACACGCT 16124 Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416 |||| || ||||| || |||| | || | | ||||||||||| | ||||| Sbjct 16123 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 16064 Query 148417 CACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473 || | | |||| ||||| | || ||| || || |||||||| ||||||| Sbjct 16063 TTCC---GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGA 16007 Query 148474 TGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGC-ATG 148529 ||| | | | || || | | || || || || || |||| | | || || Sbjct 16006 GGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATC-TGGCTGTG 15948 Query 148530 CTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCAAT 148588 | || ||||| || | ||| |||| ||| | |||| ||||||||| |||| Sbjct 15947 TTGTTGAAAACTCGGAGCATAGG-AACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAAT 15889 Query 148589 TTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAG 148647 | | ||||| || ||| || | ||||||||| |||||||| || | | || | Sbjct 15888 GTAAGCTCCAGTGGCACGGATTCTGTG-GACATTCAGACCGATGCCTCCAGCATTCTTGG 15830 Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707 | |||||||||||| ||||| || | || || |||| ||||||||||| | |||| Sbjct 15829 AGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 15770 Query 148708 TAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGAC 148767 | || | |||| || || | ||| | | |||| | | ||| || |||||| Sbjct 15769 CGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAG 15710 Query 148768 TAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATG 148826 ||||| || || | |||| | |||||| | || | |||||||| || || || Sbjct 15709 ACGCGTGTGTAAAGTAC-TTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATA 15651 Query 148827 TCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 ||||| || ||||| | ||| || | ||| | ||||||||| || Sbjct 15650 TCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGG 15604 >seq116 Length=121463 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 || ||| | || |||| || ||| || ||||| | ||||| ||||| ||| Sbjct 20509 ATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACGTCAAGTCCAAGATCCAGGAC 20450 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || ||||| |||||| | ||||| | || |||||| |||||||||||| Sbjct 20449 AAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGAT 20390 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | || |||||| ||||| || || || || ||| | ||||| ||||| Sbjct 20389 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCATCTAGTCCT 20334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478659360493760