Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq487 143 3e-29
seq116 87.8 2e-12
>seq487
Length=114140
Score = 143 bits (158), Expect = 3e-29
Identities = 429/647 (66%), Gaps = 19/647 (3%)
Strand=Plus/Minus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
||||||||| |||||||| || |||||||| |||| ||||| | || || |||
Sbjct 16242 CTTGCCTTCTGCCTCGTACTTCTCGTAAAGAGCCTCAAATTCGTCACCGTAAACATCAGC 16183
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCC-TCCTGTCTTTACCCTCT 148356
| |||||| ||||||| ||||||||||| || |||| | || | || ||| || | ||
Sbjct 16182 AAGACCGGGGCACTCGTTGGGGCACATCAGTGTCCATGTACCATTCT-TCTCAACACGCT 16124
Query 148357 TCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTCGG 148416
|||| || ||||| || |||| | || | | ||||||||||| | |||||
Sbjct 16123 TCATGAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCT 16064
Query 148417 CACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGA 148473
|| | | |||| ||||| | || ||| || || |||||||| |||||||
Sbjct 16063 TTCC---GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGA 16007
Query 148474 TGTATACGGTCATGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGC-ATG 148529
||| | | | || || | | || || || || || |||| | | || ||
Sbjct 16006 GGTAGATCGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATC-TGGCTGTG 15948
Query 148530 CTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCAAT 148588
| || ||||| || | ||| |||| ||| | |||| ||||||||| ||||
Sbjct 15947 TTGTTGAAAACTCGGAGCATAGG-AACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAAT 15889
Query 148589 TTTACTATTGGTGGCGCGAATT-TGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAG 148647
| | ||||| || ||| || | ||||||||| |||||||| || | | || |
Sbjct 15888 GTAAGCTCCAGTGGCACGGATTCTGTG-GACATTCAGACCGATGCCTCCAGCATTCTTGG 15830
Query 148648 ATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGT 148707
| |||||||||||| ||||| || | || || |||| ||||||||||| | ||||
Sbjct 15829 AGATCATGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGT 15770
Query 148708 TAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGAC 148767
| || | |||| || || | ||| | | |||| | | ||| || ||||||
Sbjct 15769 CGATCAAGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAG 15710
Query 148768 TAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATG 148826
||||| || || | |||| | |||||| | || | |||||||| || || ||
Sbjct 15709 ACGCGTGTGTAAAGTAC-TTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATA 15651
Query 148827 TCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873
||||| || ||||| | ||| || | ||| | ||||||||| ||
Sbjct 15650 TCATCCCCGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGG 15604
>seq116
Length=121463
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
|| ||| | || |||| || ||| || ||||| | ||||| ||||| |||
Sbjct 20509 ATTACCCTAGAGGTAGAGTCTTCCGATACTATCGATAACGTCAAGTCCAAGATCCAGGAC 20450
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || ||||| |||||| | ||||| | || |||||| ||||||||||||
Sbjct 20449 AAGGAGGGCATTCCCCCCGACCAACAACGCCTCATCTTCGCCGGCAAGCAACTCGAAGAT 20390
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | || |||||| ||||| || || || || ||| | ||||| |||||
Sbjct 20389 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACTCTTCATCTAGTCCT 20334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478659360493760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |