Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq487 351 3e-91 seq202 86.0 2e-11 >seq487 Length=114140 Score = 351 bits (388), Expect = 3e-91 Identities = 1171/1797 (65%), Gaps = 47/1797 (3%) Strand=Plus/Plus Query 363386 ATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTC-GTATCAATGGTGATATT 363444 ||| ||| |||| ||||| | |||| ||| ||||| |||| || || | || | ||| Sbjct 15537 ATACTTT-GGATTCAAGACTCTTGAGAGATCATACCT-TCTCCGTCTCGAGGGCAAGATT 15594 Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 | ||||| || || || ||| | ||| | || ||| | ||||| || | ||| || Sbjct 15595 GCCGAACGTCCACAACACATGATCATGAGAGTGGCTGTGGGTATTCACGGGGATGATATT 15654 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGC 363562 || || || || ||||| || || | || | | ||| || || ||||| | | Sbjct 15655 GAGAGTGCTATCGAGACATACAA--TTTGATGTCCAGCAAGTACTTTACACACGCGTCTC 15712 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 |||| | | || || || | | |||| | ||||| ||||| | | | | Sbjct 15713 CAACCCTCTTTGCCGCCGGCACACCACAAGCACAACTCTCTTCATGCTTCTTGATCGACA 15772 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 ||||||| || ||||| ||||| | || || || |||| |||||| | || |||| Sbjct 15773 TGAAGGAGGACAGTATCGACGGTATTTACGATACTCTCAAGACTTGTGCCATGATCTCCA 15832 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATT 363741 ||||||| || || || ||| | |||||| | ||||| || || ||||||| Sbjct 15833 AGAATGCTGGAGGCATCGGTCTGAATGTCCACAGAATCCGTGC-CACTGGAGCTTACATT 15891 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 |||||| || |||| || || | ||||| ||||| || || || |||| || Sbjct 15892 GCTGGCACAAACGGGAACTCCAACGGTATTGTTCCTATGCTCCGAGTTTTCAACAACACA 15951 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || || || || |||||||||||| |||||| || || || || || || |||||| Sbjct 15952 GCCAGATATGTTGACCAGGGTGGAAATAAGCGCCCTGGTGCTTTCGCGATCTACCTCGAG 16011 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || || ||| | |||||||| ||||| ||||| || ||| ||||| |||||| Sbjct 16012 CCATGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGAAAGGAGGAA 16071 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | || || || ||||| ||||| || || ||| || | || | || |||||||| || Sbjct 16072 GTTCGCGCTCGCGATCTCTTCTACGCTCTATGGATTCCAGATCTCTTCATGAAGCGTGTT 16131 Query 363982 GAGGCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCC 364035 ||| |||||| ||| |||| | ||||| |||| || || |||||| | Sbjct 16132 GAG------AAGAATGGTACATGGACACTGATGTGCCCCAACGAGTGCCCCGGTCTTGCT 16185 Query 364036 GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCT 364095 ||||| | |||||||| | || ||||| ||||| ||||| || | || || |||| | Sbjct 16186 GATGTTTACGGTGACGAATTTGAGGCTCTTTACGAGAAGTACGAGGCAGAAGGCAAGGGT 16245 Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 || ||||| || || |||||||| |||| ||||| | || |||| | ||||| Sbjct 16246 CGCAAGACCATCAAGGCCCAGAAGCTTTGGTACTCCATCCTCGAGGCGCAAACCGAGACC 16305 Query 364156 GGAACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCT 364214 |||| ||||| | ||| | ||||| ||| | |||||||| ||| || ||| || |||| Sbjct 16306 GGAA-ACCCTTTCATGCTCTACAAGGATGCTTGCAACCGTAAGAGTAATCAGAAGAACCT 16364 Query 364215 TGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 |||||| | || |||| ||| || || || ||||| |||||||| || || |||| Sbjct 16365 TGGTACCA-TCCGCAGCTCCAATCTCTGCACAGAGATCGTTGAATACTGTGCACCTGACG 16423 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATG 364327 || || || |||||| | || || | || || || | | || ||| |||| Sbjct 16424 AGGTCGCTGTTTGTAACTTGGCTTCTCTTGCTCTCCCAACTTACGTCAACCAAAATGATG 16483 Query 364328 GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT-ACTTGCA-ATCTCG- 364384 | | | ||| ||| | ||| | || || || || | | | || | | || | Sbjct 16484 GCAGCTACGACTTTCAGAAGCTTCACGATGT---CTGCCAGGTTGTCGTGAAGAACTTGA 16540 Query 364385 ACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGT 364443 ||||| | ||||||| || || || || |||| || || || | | ||| | ||| Sbjct 16541 ACAAGATCATCGACATCAACTACTACCCTGTTCCCGAGGCACGCAAGAGC-AATTTCCGT 16599 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATG 364503 || | || |||| | ||||||| ||||| ||||| || || || | || | Sbjct 16600 CACAGACCTATTGCTGTTGGTGTCCAGGGTCTCGCCGATGTYTTCCTAGCTCTTCGTCTC 16659 Query 364504 GCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTT 364563 |||| || || || || || || || | ||||||| || || || || Sbjct 16660 CCATTCGAGTCTCCCGAGGCCAAACACCTCAACATCCAGATCTTCGAGACCATCTACCAC 16719 Query 364564 GCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAG 364623 || || ||||| | || ||| | ||||| | || | ||| || || || Sbjct 16720 GCTGCCTTGACTTCATCTGTTGAGCTTGCAAAGCAGCATGGTACTTACGAGACATACGAA 16779 Query 364624 GGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTC 364683 || ||||| ||| || ||| | |||| | ||| | ||||| || || || | | Sbjct 16780 GGTTCCCCAGCTTCACAAGGAGAGCTCCAATACGATATGTGGAAGGTTACACCTACCGAT 16839 Query 364684 CGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TC 364739 | ||| |||||| || | | | ||| | ||| |||| ||| ||| ||| | Sbjct 16840 CTTTGGGACTGGGCCACCTTGAAGCAACAA-ATCAAGCAGCACGGTCTTCGTAACAGTTT 16898 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 |||||| || || ||||| || || ||| || ||||| || ||||||||| Sbjct 16899 GCTCGTT---GCTCCTATGCCAACTGCCAGTACCAGTCAAATCCTTGGCTTCAACGAGTG 16955 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 ||||| || | ||| |||| | || || || || || || | || ||||| | || Sbjct 16956 TTTCGAGCCATACACATCCAATATCTACTCCCGACGTGTCCTGGCTGGTGAATTCCAAGT 17015 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 ||||| | | | ||||||||| ||| || || ||| || | |||||| Sbjct 17016 CGTTAACCCTTGGTTGTTGAAGGATCTTGTCGATATGGGTCTCTGGTCAGATAACATGAA 17075 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 |||| ||||||||||| | ||||| | || || | || |||| | ||| | Sbjct 17076 GAACCGTATCATCGCCGATGGAGGTTCCATCCAAAATGTCCCTAACATTCCTGCCGATAT 17135 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 ||| || ||||||| || || ||||| || ||| ||| || || || | ||||| || Sbjct 17136 CAAGGCTCTTTACAAGACTGTCTGGGAGATCTCCCAGCGTACCATCGTTCAGATGGCTGC 17195 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAAC 365099 ||||| ||||| || ||| ||| ||| ||| | ||| | ||||| | ||||| Sbjct 17196 TGATCGTGGTGCCTTCATCGACCAGTCCCAATCGATGAACATCCACATGAAGGATCCAAC 17255 Query 365100 CTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||| | || ||||| ||| || ||||| | ||||| ||||| || Sbjct 17256 TATGGGCAAGATCACGAGTATGCACTTCGCTGGCTGGAAGTTGGGTCTGAAGACCGG 17312 >seq202 Length=612551 Score = 86.0 bits (94), Expect = 2e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 111423 AAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCG-ACAA 111481 || || |||||||| || ||||| || || | ||| ||||| || || |||||| || Sbjct 342796 AAGATCTGGGATGGCAACGGATCGCGCGAATATCTCGATTCGGTCGGG-TTGTCGCACCG 342854 Query 111482 CGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTA 111541 || || |||||||| ||||| || ||||| ||||| ||| | || ||||||||||| || Sbjct 342855 CGCAGTCGGTGATCTTGGACCTGTATACGGTTTTCAGTGGAGGCATTTTGGTGCAGAATA 342914 Query 111542 C 111542 | Sbjct 342915 C 342915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303345116797256