Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq359 120 3e-22
seq344 107 2e-18
seq116 82.4 7e-11
>seq359
Length=494912
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104
|||||||||||||||| ||| | || || ||||| |||||||| || ||| |||
Sbjct 437949 CCTTTTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 437890
Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164
| ||||| |||||||| || |||||||| || ||||| ||| || ||||| | |
Sbjct 437889 TCAAACGTTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 437830
Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
| | ||||||| |||||| | |||| ||||| || || ||||| |||||||| ||||
Sbjct 437829 CAATCGTATCGGAGGACTCTACCTCGAGGGTAATTGTCTTTCCGGTGAGAGTTTTGACGA 437770
Query 131225 A 131225
|
Sbjct 437769 A 437769
>seq344
Length=396322
Score = 107 bits (118), Expect = 2e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||| || || || || | || |||||||| || ||||||||||||
Sbjct 110328 CCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCGGAT 110387
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| ||||| | |||||| || ||| | || | | ||||||||| ||||||
Sbjct 110388 AGGGTGCGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGAGGG 110447
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| ||| ||||| | || | ||||||| || ||||
Sbjct 110448 ATGCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCGATGGTATCGGATGATTCGACT 110507
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224
|||| || | ||| || || || ||||| || ||||
Sbjct 110508 TCGAGAGTGATGGTCTTGCCAGTAAGAGTCTTGACGA 110544
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | || || || | ||| | || |||||||| || ||||| ||||| |
Sbjct 110100 CCACCACGAAGGCGAAGAACCAGATGAAGAGTAGACTCCTTCTGGATGTTATAATCAGAC 110159
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||||| | |||||| || ||| | || | | ||||||||| || |||
Sbjct 110160 AAGGTACGGCCATCCTCCAACTGCTTTCCAGCGAAAATGAGTCTCTGCTGGTCGGGTGGG 110219
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | |||||| | || ||||
Sbjct 110220 ATACCCTCCTTGTCCTGGATCTTTGACTTGACGTTATCAATAGTATCAGATGATTCGACC 110279
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | || || ||||| ||||| || ||||||||||||||
Sbjct 110280 TCGAGTGTGATTGTCTTTCCGGTCAGAGTCTTGACGAAAATCTGCAT 110326
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || || | ||| | || || ||||| || |||||||||||
Sbjct 110620 CCGCCACGAAGACGGAGGACGAGATGAAGAGTAGATTCCTTCTGGATGTTGTAATCCGAG 110679
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| |||||| ||||||||||| ||| |||| |||||||||||||| || ||
Sbjct 110680 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCGGGGGGA 110739
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | ||| || | |||||||
Sbjct 110740 ATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGTCGATAGTGTCCGAAGACTCGACC 110799
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|||| || | ||| || |||||
Sbjct 110800 TCGAGAGTGATGGTCTTGCCGGT 110822
>seq116
Length=121463
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || || | ||| || |||| ||| | ||||||||||| || |||||||| |||
Sbjct 20319 CCTCCACGGAGACGGAGGACTAGATGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAG 20378
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || || || || |||||||| ||| |||| | || || ||||| || ||
Sbjct 20379 AGGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAGATGAGGCGTTGTTGGTCGGGGGGA 20438
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || || ||||| ||| || ||||| | || | |||||||| ||||| |
Sbjct 20439 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTATCGATAGTATCGGAAGACTCTACC 20498
Query 131188 TCGACGGTAACGGTTTTACCGGT 131210
|| | ||||| || || || ||
Sbjct 20499 TCTAGGGTAATTGTCTTGCCCGT 20521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472009802718720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |