Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10-
26] 508 sequences; 52,477,121 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq487 185 1e-41
seq172 96.9 4e-15
>seq487
Length=114140
Score = 185 bits (204), Expect = 1e-41
Identities = 1191/1890 (63%), Gaps = 59/1890 (3%)
Strand=Plus/Minus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||||||||||||||| || | | ||||| || |||||||| || || || |||
Sbjct 17360 GTGAATTGAATGGGAGCGGAAGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTCAGA 17301
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| || || ||||||||||| | ||| | | ||||| ||
Sbjct 17300 CCCAACTTCCAGCCAGCGAAGTGCATACTCGTGATCTTGCCCATAGTTGGATCCTTCATG 17241
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
||||| ||||| ||||| || ||||||||||| || | || |||||||| | |
Sbjct 17240 TGGATGTTCATCGATTGGGACTGGTCGATGAAGGCACCACGATCAGCAGCCATCTGAACG 17181
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || || | || ||||| | ||| || |||| ||| ||||| | |||| |
Sbjct 17180 ATGGTACGCTGGGAGATCTCCCAGACAGTCTTGTAAAGAGCCTTGATATCGGCAGGAATG 17121
Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | ||| || ||||| || ||||| || || || | ||||| || | ||| |
Sbjct 17120 TTAGGGACATTTTGGATGGAACCTCCATCGGCGATGATACGGTTCTTCATGTTATCTGAC 17061
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|| | | ||| | | | | | | || ||||| ||||| ||||| |||
Sbjct 17060 CAGAGACCCATATCGACAAGATCCTTCAACAACCAAGGGTTAACGACTTGGAATTCACCA 17001
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| || || | || | ||| ||||| || || || || | | |||| || ||
Sbjct 17000 GCCAGGACACGTCGGGAGTAGATATTGGATGTGTATGGCTCGAAACACTCGTTGAAGCCA 16941
Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326
| |||||| || ||||| |||||||| || || | ||||| || | |||||||
Sbjct 16940 AGGATTTGACTGGTACTGGCAGTTGGCATAGGAGCAACGAGCAAACTGTTACGAAGACCG 16881
Query 62327 T-ATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384
| || | |||||| | || | |||| |||| | ||||||||| | ||| |||
Sbjct 16880 TGCTGCT-TGATTTGTTGCTTCA-AGGTGGCCCAGTCCCAAAGATCGGTAGGTGTAACCT 16823
Query 62385 NNNNNNNNNNNNNTTGTAGAATACC--GTTA--CTGGCGTACGATCCTACATATGTATCG 62440
||| || || || | |||| || ||| | ||||| |||
Sbjct 16822 TCCACATATCGTATTGGAGCTCTCCTTGTGAAGCTGG----GGAACCTTCGTATGTCTCG 16767
Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTC-ACAACTCGCCTCTAATGCACCGTAATAAATGGT 62499
|| | || | || || || || || ||| | || || ||| ||| || |||||
Sbjct 16766 TAAGTACCATGCTGCTTTGCAAGCTCAACAGATGAAGTC-AAGGCAGCGTGGTAGATGGT 16708
Query 62500 TTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAG 62559
|||||||||| | || || | || || || | || ||||| | |||||
Sbjct 16707 CTCGAAGATCTGGATGTTGAGGTGTTTGGCCTCGGGAGACTCGAATGG-GAGACGAAGAG 16649
Query 62560 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618
| || | || || | || || ||||||| | | |||||||| || | ||| |
Sbjct 16648 CTAGGAARACATCGGCGAGACCCTGGACACCAACAGCAATAGGTCTGTGACGGAAATT-G 16590
Query 62619 AGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|| | || || |||| ||| || || || || || || || || || | || |
Sbjct 16589 CTCTTGCGTGCCTCGGGAACAGGGTAGTAGTTGATGTCGATGATCTTGTTCAAGTTCTTC 16530
Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT------ 62731
|| | || | | ||||| | || || |||| || | | ||||| ||
Sbjct 16529 ACGACAACCTGGCAGACATCGTGAAGCTTCTGAAAGTCGTAGCTGCCATCATTTTGGTTG 16470
Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791
|| | | | |||| ||| |||| |||||||| || ||||| | || | | ||
Sbjct 16469 ACGTAAGTTGGGAGAGCAAGAGAAGCCAAGTTACAAACAGCGACCTCGTCAG-GTGCACA 16411
Query 62792 -TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850
|||| | ||||| ||||| ||||| | |||||| || | || | |||||
Sbjct 16410 GTATTCAACGATCTCTGTGCAGAGATTGGAGCTGCGGATGGTACCAAGGTTCTTCTGATT 16351
Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910
|||||| ||| || |||||||| || || ||||| || | || || || | || |
Sbjct 16350 ACTCTTACGGTTGCAAGCATCCTTGTAGAGCATGAAAGGGTTTCCGGTCTCGGTTTGCGC 16291
Query 62911 TTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT---TT 62966
|| | || | | ||| | | || | |||| | || | ||| | ||| ||
Sbjct 16290 CTCGAGGATGGAGTACCAAAGCTTCT-GGGCCT---TGATGGTCTTGCGACCCTTGCCTT 16235
Query 62967 CTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCC 63024
|| ||||| | ||| | | | || || ||||| || |||||| | || ||
Sbjct 16234 CTGCCTCGTACTTCTCGTAAAGAGCC--TCAAATTCGTCACCGTAAACATCAGCAAGACC 16177
Query 63025 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTCGTTTCAT 63081
|| || || | || ||||||| | ||| | | | ||| |||| || || |||||
Sbjct 16176 GGGGCACTCGTTGGGGCACATCAGTGTCCA-TGTAC--CATTCTTCTCAACACGCTTCAT 16120
Query 63082 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC 63141
|||||||| |||||||| ||||| || ||||| | | | | |||||| |||||
Sbjct 16119 GAAGAGATCTGGAATCCATAGAGCGTAGAAGAGATCGCGAGCGCGAACTTCCTCCTTTCC 16060
Query 63142 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 63201
|||||| ||||| |||||| | | | ||||| ||||| || || | ||| ||
Sbjct 16059 GTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCGAGGTAGAT 16000
Query 63202 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 63261
|| | | | ||||| || || ||||| ||||| || | ||||| || ||||| || |
Sbjct 15999 CGCGAAAGCACCAGGGCGCTTATTTCCACCCTGGTCAACATATCTGGCTGTGTTGTTGAA 15940
Query 63262 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321
||||| | ||| |||| |||||| ||||| | || || || || | || || |||
Sbjct 15939 AACTCGGAGCATAGGAACAATACCGTTGGAGTTCCCGTTTGTGCCAGCAATGTAAGCTCC 15880
Query 63322 ACTGGCACGAATATT----ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377
| ||||||| || | || ||| ||||| || || || || | || ||||| |
Sbjct 15879 AGTGGCACGGATTCTGTGGAC--ATT--CAGACCGATGCCTCCAGCATTCTTGGAGATCA 15824
Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437
|| || || | ||||| || || || || ||||| || ||| |||||| | |
Sbjct 15823 TGGCACAAGTCTTGAGAGTATCGTAAATACCGTCGATACTGTCCTCCTTCATGTCGATCA 15764
Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497
|| || ||| | ||| | || || || ||| | ||| ||||| ||||
Sbjct 15763 AGAAGCATGAAGAGAGTTGTGCTTGTGGTGTGCCGGCGGCAAAGAGGGTTGGAGACGCGT 15704
Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557
| ||||| | || || | | |||||| ||||| ||||| || |||||
Sbjct 15703 GTGTAAAGTACTTGCTGGACATCAAATTGTATGTCTCGATAGCACTCTCAATATCATCCC 15644
Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617
||||| || || || || | ||| | |||||| || || | ||| | |||||| |
Sbjct 15643 CGTGAATACCCACAGCCACTCTCATGATCATGTGTTGTGGACGTTCGGCAATCTTGCCCT 15584
Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAA 63675
| | | ||| ||| | || | ||| || || ||||| || | ||| |||||
Sbjct 15583 CGAGACGGAGAAGGTATGATCTCTCAAGAGTCTTGAATCCAAAGTATTGGTAGTTGAAA- 15525
Query 63676 GTCTCGTTCGTAAATAATAACCGAGTTGAG 63705
|| || || || | ||| | ||||||||
Sbjct 15524 -TCCCGATCATAGACAATGGCAGAGTTGAG 15496
>seq172
Length=386049
Score = 96.9 bits (106), Expect = 4e-15
Identities = 567/917 (62%), Gaps = 62/917 (7%)
Strand=Plus/Plus
Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413
|| |||||| || ||||||||| || | ||||| || ||||| || || || || ||
Sbjct 24878 AGCCATAACACCAGCTTTTTGGTAGTCGGCGACACGCTTCTCGAAGAAGTTGGTCTTTCC 24937
Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473
| | || || || |||||||| |||||||| |||| || ||| | || |
Sbjct 24938 GGCAAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCGGACTTGTAA-TACTTCTCGT 24996
Query 32474 TCCCAATTCAGAA-ATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCAC 32532
| || | || | || | ||| ||||| || || || ||| ||||||| ||
Sbjct 24997 TACCGAGAGCGAGGAGCAGACGATCAGCGACGAACTCAATGTATTGCTTCATCAAAGCAG 25056
Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592
||||| || | ||| | |||||||| |||| | || ||||| || || |
Sbjct 25057 CGTTCATGCCGAGAAGAGCACAGGGAAGAGCATCAGTCAAGAACTCTTGCTCGATCTCAA 25116
Query 32593 CCGCGTCTGTTATAATAGATCTT--ACTGTTTCTTCACTCGGTGGATACAATAAATGTTT 32650
| || || || |||| |||| |||| || | || || ||| || ||
Sbjct 25117 CAGCCTCGGTAATAACG--TCTTGGACTGCTTGCTTGCTTGGACGATGGTTCAAGTGGGA 25174
Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710
|||| | || || || ||| ||| ||||| ||||| | || | ||||||||
Sbjct 25175 GAACAAGAGGCAGGCAAAGTCGGTGTGGAGACCTTCGTCACGGGAGATGAGCTCGTTGGA 25234
Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770
|| || || || ||||| || |||||||| || | ||| ||||| || || ||||| ||
Sbjct 25235 GAAGGTAAGACCTGGCATCAGACCACGCTTCTTCAACCAGAATATAGAGGCGAATGAACC 25294
Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGC 32827
|| ||||| || || || || || |||||||||| || | || | | | | |
Sbjct 25295 GGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACGAGACGCTGAGCGAATGTAGAGTC 25354
Query 32828 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA------------ 32875
| || || ||||| || ||||| ||||||||||| || | ||
Sbjct 25355 CTTATCTTGGATCCATCTTACGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAACTAGATC 25414
Query 32876 --------------------------------AGGCA------TTGTCTCTATAGCATTA 32897
||||| | ||||| ||||||||
Sbjct 25415 GTGTTAGAATATGGCACTGTGCTAATGACGCGAGGCAACTTACTGGTCTCGATAGCATTG 25474
Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957
|| |||||| | || | || |||| ||||| || || | ||| || |
Sbjct 25475 AACAGATAGGTGCGTTGAGCCTGCTCCTTAATGTATGTGTCGATGAGAAGGGAGTATGTC 25534
Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017
|| || || ||||| || || ||||| || ||||||||||| | |||||| | | |
Sbjct 25535 TCGGAGTGGATGTTCTCCATCATGATTTGGAACCCGTAGAAGCAGCGAGCCTCAGGTACC 25594
Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077
|| || ||| | ||||| || | || || || || ||||||||| || ||
Sbjct 25595 TGGACCTCTCCGCTGAATCGCTCCAGGAGGTTCTCGTTGACAATTCCGTCAGATGCAGCG 25654
Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCCAA 33134
|| || || | || || | ||| ||| | || || | ||| || |||||
Sbjct 25655 AAGAATGCAAGAACGTGGGAGACAAAGTATCTCTCATCGTCATTGAGTCTGTTGTTCCAG 25714
Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194
|| | || ||| || || | ||| | |||||| | ||||| ||||| |||||||||||
Sbjct 25715 TCGTGGAGATCCTTGGACAGATCAATTTCTTCGGCGGTCCAGAATGAAGCCTCTGCCTTC 25774
Query 33195 TTATACATATTCCAGAT 33211
|| ||||| | ||||||
Sbjct 25775 TTGTACATCTGCCAGAT 25791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633627976436800
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