Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhynchosporium_20agropyri_20[genbank_20GCA_5F900074905.1_202016-10- 26] 508 sequences; 52,477,121 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq344 116 3e-21 >seq344 Length=396322 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | || || | ||||| ||||||||| Sbjct 110098 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACTATTACTCTGGAAGTTGAGTCGTCT 110039 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| || || || || || ||||| ||||| Sbjct 110038 GACACAATCGACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCACCCGACCAG 109979 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | |||||||||| || || || || || |||| |||||| || |||| ||||| Sbjct 109978 CAGAGACTTATTTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTTTGAGCGACTACAAC 109919 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || ||| | ||||| Sbjct 109918 ATCCAGAAGGAGTCTACTCTCCATCTGGTGCT 109887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGC 25080 ||||| || ||||||| |||| || ||||| || ||||||||||| || || ||| Sbjct 110822 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCTTCGGACACTATCGA--CAATGTCAAGA 110765 Query 25081 AAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCA 25140 || ||| ||||| || || ||||| || ||||| ||||| | || || || |||| Sbjct 110764 GCAAGATCCAAGACAAGGAGGGCATTCCCCCCGACCAGCAGCGTTTGATCTTCGCTGGCA 110705 Query 25141 AACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTAC 25200 | || | || || | ||||||| | |||||||| || || || ||||| || || | Sbjct 110704 AGCAGCTCGAGGACGGTCGCACTCTCTCGGATTACAACATCCAGAAGGAATCTACTCTTC 110645 Query 25201 ATTTAGTGCT 25210 || | || || Sbjct 110644 ATCTCGTCCT 110635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325317158020